RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MCF2L2Q86YR7 1114 aa23.02■■□□□ 1.28
CPSF1-209ENST00000532725 MORC4Q8TE76 937 aa23.02■■□□□ 1.28
CPSF1-209ENST00000532725 PIBF1Q8WXW3 757 aa23.02■■□□□ 1.28
CPSF1-209ENST00000532725 RRP36Q96EU6 259 aaKnown RBP23.02■■□□□ 1.28
CPSF1-209ENST00000532725 UPF3BQ9BZI7 483 aaKnown RBP23.02■■□□□ 1.28
CPSF1-209ENST00000532725 RBM28Q9NW13 759 aaKnown RBP23.02■■□□□ 1.28
CPSF1-209ENST00000532725 CNPY2Q9Y2B0 182 aa23.02■■□□□ 1.28
CPSF1-209ENST00000532725 MSCO60682 206 aa23.01■■□□□ 1.27
CPSF1-209ENST00000532725 MNX1P50219 401 aaPredicted RBP23.01■■□□□ 1.27
CPSF1-209ENST00000532725 FUT2Q10981 343 aa23.01■■□□□ 1.27
CPSF1-209ENST00000532725 TOB2Q14106 344 aaPredicted RBP23.01■■□□□ 1.27
CPSF1-209ENST00000532725 RTN1Q16799 776 aa23.01■■□□□ 1.27
CPSF1-209ENST00000532725 CCDC82Q8N4S0 544 aa23.01■■□□□ 1.27
CPSF1-209ENST00000532725 KATNBL1Q9H079 304 aa23.01■■□□□ 1.27
CPSF1-209ENST00000532725 ABHD16BQ9H3Z7 469 aa23.01■■□□□ 1.27
CPSF1-209ENST00000532725 ADD3Q9UEY8 706 aaKnown RBP23.01■■□□□ 1.27
CPSF1-209ENST00000532725 GTF3C3Q9Y5Q9 886 aa23.01■■□□□ 1.27
CPSF1-209ENST00000532725 MKI67P46013 3256 aaKnown RBP23.01■■□□□ 1.27
CPSF1-209ENST00000532725 CDC27P30260 824 aa23■■□□□ 1.27
CPSF1-209ENST00000532725 GHRHRQ02643 423 aa23■■□□□ 1.27
CPSF1-209ENST00000532725 ACVR2BQ13705 512 aa23■■□□□ 1.27
CPSF1-209ENST00000532725 PPP2R5BQ15173 497 aa23■■□□□ 1.27
CPSF1-209ENST00000532725 SYTL5Q8TDW5 730 aaPredicted RBP23■■□□□ 1.27
CPSF1-209ENST00000532725 DDX49Q9Y6V7 483 aaKnown RBP23■■□□□ 1.27
CPSF1-209ENST00000532725 LOC102724159A0A0B4J2E5 919 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 GOLGA8AA7E2F4 631 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 GOLGA8BA8MQT2 603 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 ADD1P35611 737 aaKnown RBP22.99■■□□□ 1.27
CPSF1-209ENST00000532725 ALDH5A1P51649 535 aaPredicted RBP22.99■■□□□ 1.27
CPSF1-209ENST00000532725 PWP2Q15269 919 aaKnown RBP22.99■■□□□ 1.27
CPSF1-209ENST00000532725 SAMD3Q8N6K7 520 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 ANKLE1Q8NAG6 615 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 DNERQ8NFT8 737 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 PDRG1Q9NUG6 133 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 MAP3K20Q9NYL2 800 aaKnown RBP22.99■■□□□ 1.27
CPSF1-209ENST00000532725 COL20A1Q9P218 1284 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 MYH6P13533 1939 aa22.99■■□□□ 1.27
CPSF1-209ENST00000532725 HSD17B4P51659 736 aa22.98■■□□□ 1.27
CPSF1-209ENST00000532725 TAAR1Q96RJ0 339 aa22.98■■□□□ 1.27
CPSF1-209ENST00000532725 NAP1L2Q9ULW6 460 aaPredicted RBP22.98■■□□□ 1.27
CPSF1-209ENST00000532725 hCG_1642624A0A1W2PR95 340 aa22.97■■□□□ 1.27
CPSF1-209ENST00000532725 FARP2O94887 1054 aaPredicted RBP22.97■■□□□ 1.27
CPSF1-209ENST00000532725 CFBP00751 764 aa22.97■■□□□ 1.27
CPSF1-209ENST00000532725 PDIA3P30101 505 aaKnown RBP22.97■■□□□ 1.27
CPSF1-209ENST00000532725 METAP2P50579 478 aaKnown RBP eCLIP22.97■■□□□ 1.27
CPSF1-209ENST00000532725 ANO1Q5XXA6 986 aa22.97■■□□□ 1.27
CPSF1-209ENST00000532725 ALDH8A1Q9H2A2 487 aaPredicted RBP22.97■■□□□ 1.27
CPSF1-209ENST00000532725 SEC63Q9UGP8 760 aaKnown RBP22.97■■□□□ 1.27
CPSF1-209ENST00000532725 ZHX1Q9UKY1 873 aaPredicted RBP22.97■■□□□ 1.27
CPSF1-209ENST00000532725 FAM184BQ9ULE4 1060 aa22.97■■□□□ 1.27
CPSF1-209ENST00000532725 LCTP09848 1927 aa22.96■■□□□ 1.27
CPSF1-209ENST00000532725 CCDC196A0A1B0GTZ2 297 aa22.96■■□□□ 1.27
CPSF1-209ENST00000532725 AKR1A1P14550 325 aa22.96■■□□□ 1.27
CPSF1-209ENST00000532725 EDNRBP24530 442 aa22.96■■□□□ 1.27
CPSF1-209ENST00000532725 CCDC144BQ3MJ40 725 aa22.96■■□□□ 1.27
CPSF1-209ENST00000532725 V9GY48 417 aaPredicted RBP22.96■■□□□ 1.27
CPSF1-209ENST00000532725 MCM3APO60318 1980 aa22.96■■□□□ 1.27
CPSF1-209ENST00000532725 NID2Q14112 1375 aa22.95■■□□□ 1.26
CPSF1-209ENST00000532725 TAPT1Q6NXT6 567 aa22.95■■□□□ 1.26
CPSF1-209ENST00000532725 DIS3LQ8TF46 1054 aaKnown RBP22.95■■□□□ 1.26
CPSF1-209ENST00000532725 CNTNAP5Q8WYK1 1306 aa22.95■■□□□ 1.26
CPSF1-209ENST00000532725 ZNF274Q96GC6 653 aaPredicted RBP22.95■■□□□ 1.26
CPSF1-209ENST00000532725 PAWRQ96IZ0 340 aaKnown RBP22.95■■□□□ 1.26
CPSF1-209ENST00000532725 LARP6Q9BRS8 491 aaKnown RBP22.95■■□□□ 1.26
CPSF1-209ENST00000532725 GCOM1H8Y6P7 765 aaPredicted RBP22.94■■□□□ 1.26
CPSF1-209ENST00000532725 POLR2MP0CAP2 368 aa22.94■■□□□ 1.26
CPSF1-209ENST00000532725 RARBP10826 455 aa22.94■■□□□ 1.26
CPSF1-209ENST00000532725 EEPD1Q7L9B9 569 aa22.94■■□□□ 1.26
CPSF1-209ENST00000532725 NSUN6Q8TEA1 469 aaKnown RBP22.94■■□□□ 1.26
CPSF1-209ENST00000532725 RMDN3Q96TC7 470 aa22.94■■□□□ 1.26
CPSF1-209ENST00000532725 PDGFCQ9NRA1 345 aa22.94■■□□□ 1.26
CPSF1-209ENST00000532725 ADCY6O43306 1168 aa22.93■■□□□ 1.26
CPSF1-209ENST00000532725 HOXA13P31271 388 aaPredicted RBP22.93■■□□□ 1.26
CPSF1-209ENST00000532725 NTRK3Q16288 839 aa22.93■■□□□ 1.26
CPSF1-209ENST00000532725 NECAB2Q7Z6G3 386 aa22.93■■□□□ 1.26
CPSF1-209ENST00000532725 ARRDC4Q8NCT1 418 aa22.93■■□□□ 1.26
CPSF1-209ENST00000532725 IWS1Q96ST2 819 aa22.93■■□□□ 1.26
CPSF1-209ENST00000532725 VTA1Q9NP79 307 aa22.93■■□□□ 1.26
CPSF1-209ENST00000532725 TNRC18O15417 2968 aaPredicted RBP22.93■■□□□ 1.26
CPSF1-209ENST00000532725 B4DLN1 442 aa22.92■■□□□ 1.26
CPSF1-209ENST00000532725 DUSP11O75319 330 aaKnown RBP22.92■■□□□ 1.26
CPSF1-209ENST00000532725 MRPL12P52815 198 aaKnown RBP22.92■■□□□ 1.26
CPSF1-209ENST00000532725 CCT2P78371 535 aaKnown RBP22.92■■□□□ 1.26
CPSF1-209ENST00000532725 IQSEC1Q6DN90 963 aa22.92■■□□□ 1.26
CPSF1-209ENST00000532725 FBXO16Q8IX29 292 aaPredicted RBP22.92■■□□□ 1.26
CPSF1-209ENST00000532725 LENG1Q96BZ8 264 aaPredicted RBP22.92■■□□□ 1.26
CPSF1-209ENST00000532725 MPHOSPH6Q99547 160 aaKnown RBP22.92■■□□□ 1.26
CPSF1-209ENST00000532725 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.91■■□□□ 1.26
CPSF1-209ENST00000532725 COL6A1P12109 1028 aa22.91■■□□□ 1.26
CPSF1-209ENST00000532725 ADCYAP1R1P41586 468 aa22.91■■□□□ 1.26
CPSF1-209ENST00000532725 PDE4DQ08499 809 aa22.91■■□□□ 1.26
CPSF1-209ENST00000532725 LRRC41Q15345 812 aa22.91■■□□□ 1.26
CPSF1-209ENST00000532725 GJC2Q5T442 439 aaPredicted RBP22.91■■□□□ 1.26
CPSF1-209ENST00000532725 ARHGEF16Q5VV41 709 aa22.91■■□□□ 1.26
CPSF1-209ENST00000532725 NCOA5Q9HCD5 579 aaKnown RBP22.91■■□□□ 1.26
CPSF1-209ENST00000532725 XPNPEP3Q9NQH7 507 aa22.91■■□□□ 1.26
CPSF1-209ENST00000532725 PXMP2Q9NR77 195 aa22.91■■□□□ 1.26
CPSF1-209ENST00000532725 RBM47A0AV96 593 aaKnown RBP22.9■■□□□ 1.26
CPSF1-209ENST00000532725 PIK3CDO00329 1044 aa22.9■■□□□ 1.26
CPSF1-209ENST00000532725 DNM1LO00429 736 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms