RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 A0A1W2PQ27 194 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 A0A1W2PQ64 194 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 A0A1W2PQC6 194 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 A0A1W2PQD8 194 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 CEBPAP49715 358 aaPredicted RBP6.24□□□□□ -1.41
CD44-235ENST00000532339 KIR3DS1Q14943 382 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 NT5DC4Q86YG4 428 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 FIBCD1Q8N539 461 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 C19orf47Q8N9M1 422 aaKnown RBP6.24□□□□□ -1.41
CD44-235ENST00000532339 TMEM52Q8NDY8 209 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 SIGLEC10Q96LC7 697 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 JMJD8Q96S16 334 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 PHAXQ9H814 394 aaKnown RBP6.24□□□□□ -1.41
CD44-235ENST00000532339 IMPACTQ9P2X3 320 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.24□□□□□ -1.41
CD44-235ENST00000532339 ZCCHC11Q5TAX3 1644 aaKnown RBP6.24□□□□□ -1.41
CD44-235ENST00000532339 ARHGEF40Q8TER5 1519 aa6.24□□□□□ -1.41
CD44-235ENST00000532339 GIPRP48546 466 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 HDLBPQ00341 1268 aaKnown RBP6.23□□□□□ -1.41
CD44-235ENST00000532339 POU4F1Q01851 419 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 RAB3GAP1Q15042 981 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 JAMLQ86YT9 394 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 NOL6Q9H6R4 1146 aaKnown RBP6.23□□□□□ -1.41
CD44-235ENST00000532339 TNFRSF12AQ9NP84 129 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 KLHL14Q9P2G3 628 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 DIS3Q9Y2L1 958 aaKnown RBP6.23□□□□□ -1.41
CD44-235ENST00000532339 IRAK3Q9Y616 596 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 LTBP3Q9NS15 1303 aa6.23□□□□□ -1.41
CD44-235ENST00000532339 KIAA0556O60303 1618 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 FER1L4A9Z1Z3 1794 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 N4BP3O15049 544 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 FGF10O15520 208 aaPredicted RBP6.22□□□□□ -1.41
CD44-235ENST00000532339 CBFA2T2O43439 604 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 GJA8P48165 433 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 GNPTABQ3T906 1256 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 LCE4AQ5TA78 99 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 TCERG1LQ5VWI1 586 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 TMEM151BQ8IW70 566 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 FCRL3Q96P31 734 aaPredicted RBP6.22□□□□□ -1.41
CD44-235ENST00000532339 HAUS7Q99871 368 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 GBP3Q9H0R5 595 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 CNTD2Q9H8S5 307 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 WHRNQ9P202 907 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 RAPGEFL1Q9UHV5 662 aa6.22□□□□□ -1.41
CD44-235ENST00000532339 SETD1BQ9UPS6 1966 aaKnown RBP6.21□□□□□ -1.42
CD44-235ENST00000532339 A0A1W2PQH9 124 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 NUDT19A8MXV4 375 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 TBC1D8O95759 1140 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 CD3EP07766 207 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 EPHB3P54753 998 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 SLC7A5Q01650 507 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 SSPNQ14714 243 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 CBX2Q14781 532 aaPredicted RBP6.21□□□□□ -1.42
CD44-235ENST00000532339 HEATR6Q6AI08 1181 aaKnown RBP6.21□□□□□ -1.42
CD44-235ENST00000532339 TTLL10Q6ZVT0 673 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 TMC6Q7Z403 805 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 ZDHHC15Q96MV8 337 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 WRNQ14191 1432 aaPredicted RBP eCLIP6.21□□□□□ -1.42
CD44-235ENST00000532339 PTPRKQ15262 1439 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 AKNAQ7Z591 1439 aa6.21□□□□□ -1.42
CD44-235ENST00000532339 FRMPD1Q5SYB0 1578 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 IFNGR1P15260 489 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 PI3P19957 117 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 NASPP49321 788 aaPredicted RBP6.2□□□□□ -1.42
CD44-235ENST00000532339 CDR1P51861 262 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 MVKQ03426 396 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 NR1I3Q14994 352 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 C9orf131Q5VYM1 1079 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 MZB1Q8WU39 189 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 CPLX3Q8WVH0 158 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 PTCHD1Q96NR3 888 aa6.2□□□□□ -1.42
CD44-235ENST00000532339 A0A1W2PQJ5 194 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 PPM1BO75688 479 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 INHBBP09529 407 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 CORO7P57737 925 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 PPP2R5DQ14738 602 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 RPTNQ6XPR3 784 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 ADAT2Q7Z6V5 191 aaKnown RBP6.19□□□□□ -1.42
CD44-235ENST00000532339 LDHDQ86WU2 507 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 ZNF428Q96B54 188 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 SHDQ96IW2 340 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 SEC16BQ96JE7 1060 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 KRTAP4-7Q9BYR0 210 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 TGIF2Q9GZN2 237 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 KLHL25Q9H0H3 589 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 PCDHB10Q9UN67 800 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 NEO1Q92859 1461 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 ARHGEF12Q9NZN5 1544 aa6.19□□□□□ -1.42
CD44-235ENST00000532339 IRS4O14654 1257 aaPredicted RBP6.18□□□□□ -1.42
CD44-235ENST00000532339 SRGAP3O43295 1099 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 MSL3P1P0C860 447 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 MAPKAPK2P49137 400 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 PPP2R5EQ16537 467 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 EEF1DP3Q658K8 133 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 RCSD1Q6JBY9 416 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 LILRA6Q6PI73 481 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 ZC3H14Q6PJT7 736 aaKnown RBP6.18□□□□□ -1.42
CD44-235ENST00000532339 ADCY4Q8NFM4 1077 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 PDLIM7Q9NR12 457 aa6.18□□□□□ -1.42
CD44-235ENST00000532339 KIAA1522Q9P206 1035 aaPredicted RBP6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms