RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 NPHP3-ACAD11A0A0J9YXS1 232 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 HRKO00198 91 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 TBX1O43435 398 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 PSPNO60542 156 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 THBDP07204 575 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 CYP4F3Q08477 520 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 KCNAB2Q13303 367 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 JAMLQ86YT9 394 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 PMFBP1Q8TBY8 1022 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 KCTD13Q8WZ19 329 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 C1orf159Q96HA4 380 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 FMNL2Q96PY5 1086 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 JMJD8Q96S16 334 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 SRPK1Q96SB4 655 aaKnown RBP7.23□□□□□ -1.25
CD44-231ENST00000531110 C19orf44Q9H6X5 657 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 ARHGEF4Q9NR80 690 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 GPR160Q9UJ42 338 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 PRDM4Q9UKN5 801 aa7.23□□□□□ -1.25
CD44-231ENST00000531110 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.23□□□□□ -1.25
CD44-231ENST00000531110 TRAV20A0A0B4J274 112 aa7.22□□□□□ -1.25
CD44-231ENST00000531110 ZNF503-AS2A6NEH8 195 aa7.22□□□□□ -1.25
CD44-231ENST00000531110 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.22□□□□□ -1.25
CD44-231ENST00000531110 SNRPB2P08579 225 aaKnown RBP7.22□□□□□ -1.25
CD44-231ENST00000531110 ARL4AP40617 200 aa7.22□□□□□ -1.25
CD44-231ENST00000531110 ERVFRD-1P60508 538 aa7.22□□□□□ -1.25
CD44-231ENST00000531110 SSRP1Q08945 709 aaKnown RBP7.22□□□□□ -1.25
CD44-231ENST00000531110 SLC35F1Q5T1Q4 408 aa7.22□□□□□ -1.25
CD44-231ENST00000531110 KREMEN2Q8NCW0 462 aa7.22□□□□□ -1.25
CD44-231ENST00000531110 FRS2Q8WU20 508 aa7.22□□□□□ -1.25
CD44-231ENST00000531110 TRIM44Q96DX7 344 aaPredicted RBP7.22□□□□□ -1.25
CD44-231ENST00000531110 INTS4Q96HW7 963 aaKnown RBP7.22□□□□□ -1.25
CD44-231ENST00000531110 FAM221BA6H8Z2 402 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 ADCY3O60266 1144 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 PLS3P13797 630 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 TRHRP34981 398 aaPredicted RBP7.21□□□□□ -1.26
CD44-231ENST00000531110 RSPO2Q6UXX9 243 aaPredicted RBP7.21□□□□□ -1.26
CD44-231ENST00000531110 SPATC1Q76KD6 591 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 DPH6Q7L8W6 267 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 ZBTB38Q8NAP3 1195 aaPredicted RBP7.21□□□□□ -1.26
CD44-231ENST00000531110 PLCD4Q9BRC7 762 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 LGR4Q9BXB1 951 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 LNPKQ9C0E8 428 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 PDLIM7Q9NR12 457 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 NPFFR2Q9Y5X5 522 aa7.21□□□□□ -1.26
CD44-231ENST00000531110 SRGAP3O43295 1099 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 EFEMP2O95967 443 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 TMEM145Q8NBT3 493 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 ZNF622Q969S3 477 aaKnown RBP eCLIP7.2□□□□□ -1.26
CD44-231ENST00000531110 SLC26A8Q96RN1 970 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 POLR3GLQ9BT43 218 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 PDCL3Q9H2J4 239 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 TNFRSF12AQ9NP84 129 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 IMPACTQ9P2X3 320 aa7.2□□□□□ -1.26
CD44-231ENST00000531110 CCDC163A0A0D9SF12 145 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 CCDC85CA6NKD9 419 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 MEFVO15553 781 aaPredicted RBP7.19□□□□□ -1.26
CD44-231ENST00000531110 NPHS1O60500 1241 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 PABPC1P11940 636 aaKnown RBP7.19□□□□□ -1.26
CD44-231ENST00000531110 PRKCAP17252 672 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 LTBRP36941 435 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 GTF2A2P52657 109 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 CYP4F8P98187 520 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 MVKQ03426 396 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 TMEM62Q0P6H9 643 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 TAF3Q5VWG9 929 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 SCUBE1Q8IWY4 988 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 NUP43Q8NFH3 380 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 MRFAP1L1Q96HT8 127 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 IER2Q9BTL4 223 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 GPRC5CQ9NQ84 441 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.19□□□□□ -1.26
CD44-231ENST00000531110 CLEC1BQ9P126 229 aa7.19□□□□□ -1.26
CD44-231ENST00000531110 NOP58Q9Y2X3 529 aaKnown RBP7.19□□□□□ -1.26
CD44-231ENST00000531110 A0A1W2PQ27 194 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 A0A1W2PQ64 194 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 A0A1W2PQC6 194 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 A0A1W2PQD8 194 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 C7orf72A4D263 438 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 ABLIM1O14639 778 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 DLX3O60479 287 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 ECI1P42126 302 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 GRIA2P42262 883 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 KCNJ6P48051 423 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 CCDC144BQ3MJ40 725 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 OLFML2BQ68BL8 750 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 MPZL3Q6UWV2 235 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 NSMFQ6X4W1 530 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 Q8N1Y9 231 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 THAP3Q8WTV1 239 aaPredicted RBP7.18□□□□□ -1.26
CD44-231ENST00000531110 DIO2Q92813 273 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 OSBP2Q969R2 916 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 MAP7D2Q96T17 732 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 ZFYVE21Q9BQ24 234 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 RNF114Q9Y508 228 aa7.18□□□□□ -1.26
CD44-231ENST00000531110 OR14I1A6ND48 311 aa7.17□□□□□ -1.26
CD44-231ENST00000531110 DIAPH1O60610 1272 aaKnown RBP7.17□□□□□ -1.26
CD44-231ENST00000531110 PEX10O60683 326 aa7.17□□□□□ -1.26
CD44-231ENST00000531110 CBX2Q14781 532 aaPredicted RBP7.17□□□□□ -1.26
CD44-231ENST00000531110 NR1I3Q14994 352 aa7.17□□□□□ -1.26
CD44-231ENST00000531110 SF1Q15637 639 aaKnown RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms