RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 AFMP43652 599 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 KCNJ6P48051 423 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 EGR3Q06889 387 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 CLEC16AQ2KHT3 1053 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 PLEKHG6Q3KR16 790 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 DALRD3Q5D0E6 543 aaKnown RBP4.51□□□□□ -1.69
CD44-229ENST00000528672 CCDC181Q5TID7 509 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 RNF111Q6ZNA4 994 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 DHX37Q8IY37 1157 aaKnown RBP4.51□□□□□ -1.69
CD44-229ENST00000528672 UBR7Q8N806 425 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 SLC7A14Q8TBB6 771 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 SLC26A8Q96RN1 970 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 IRF2BPLQ9H1B7 796 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 ADAMTS10Q9H324 1103 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 RXFP1Q9HBX9 757 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 DUSP13Q9UII6 198 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 TMEM59LQ9UK28 342 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 TCFL5Q9UL49 500 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 CTNND2Q9UQB3 1225 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 PLAAQ9Y263 795 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 ZNF281Q9Y2X9 895 aa4.51□□□□□ -1.69
CD44-229ENST00000528672 ARID4BQ4LE39 1312 aaPredicted RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 IQCA1LA6NCM1 817 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 FAM83GA6ND36 823 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 PPM1BO75688 479 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 PARNO95453 639 aaKnown RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 S100BP04271 92 aaPredicted RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 SNRPB2P08579 225 aaKnown RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 MSL3P1P0C860 447 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 PLS3P13797 630 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 RAC2P15153 192 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 SDHBP21912 280 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 CNGA1P29973 690 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 GFRA1P56159 465 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 NR0B2Q15466 257 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 LONRF2Q1L5Z9 754 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 FBLN7Q53RD9 439 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 TMEM67Q5HYA8 995 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 ZC3H12BQ5HYM0 836 aaKnown RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 FAM9AQ8IZU1 332 aaPredicted RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 LILRA2Q8N149 483 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 LRRC47Q8N1G4 583 aaKnown RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 SYTL4Q96C24 671 aaPredicted RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 SCLYQ96I15 445 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 AARSD1Q9BTE6 412 aaKnown RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 G6PC3Q9BUM1 346 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 CDADC1Q9BWV3 514 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 EPN3Q9H201 632 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 KCNK12Q9HB15 430 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 C19orf73Q9NVV2 129 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 FAM53CQ9NYF3 392 aa4.5□□□□□ -1.69
CD44-229ENST00000528672 MRPS23Q9Y3D9 190 aaKnown RBP4.5□□□□□ -1.69
CD44-229ENST00000528672 CCDC163A0A0D9SF12 145 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 NOTOA8MTQ0 251 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 IRS4O14654 1257 aaPredicted RBP4.49□□□□□ -1.69
CD44-229ENST00000528672 AURKAO14965 403 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 USP2O75604 605 aaPredicted RBP4.49□□□□□ -1.69
CD44-229ENST00000528672 RASGRP1O95267 797 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 VIL1P09327 827 aaKnown RBP4.49□□□□□ -1.69
CD44-229ENST00000528672 PDGFRBP09619 1106 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 LTKP29376 864 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 CHRNEQ04844 493 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 DUSP4Q13115 394 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 ZNF460Q14592 562 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 SKOR2Q2VWA4 1001 aaPredicted RBP4.49□□□□□ -1.69
CD44-229ENST00000528672 NSMFQ6X4W1 530 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 USP53Q70EK8 1073 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 KRT26Q7Z3Y9 468 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 WAPLQ7Z5K2 1190 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 ZSWIM9Q86XI8 627 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 SIRT2Q8IXJ6 389 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 LINC00116Q8NCU8 138 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 PDZD8Q8NEN9 1154 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 NPLOC4Q8TAT6 608 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 STAG1Q8WVM7 1258 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 RCC1LQ96I51 464 aaKnown RBP4.49□□□□□ -1.69
CD44-229ENST00000528672 PLCD4Q9BRC7 762 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 GBP3Q9H0R5 595 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 NKX2-4Q9H2Z4 354 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 C19orf44Q9H6X5 657 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 SLC52A2Q9HAB3 445 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 TYW1Q9NV66 732 aaKnown RBP4.49□□□□□ -1.69
CD44-229ENST00000528672 SLAMF8Q9P0V8 285 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 CHPF2Q9P2E5 772 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 G3BP2Q9UN86 482 aaKnown RBP4.49□□□□□ -1.69
CD44-229ENST00000528672 PCDHA9Q9Y5H5 950 aa4.49□□□□□ -1.69
CD44-229ENST00000528672 TRBV23-1A0A0A0MS06 115 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 TRAV20A0A0B4J274 112 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 FITM1A5D6W6 292 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 C2orf71A6NGG8 1288 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 AGRPO00253 132 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 ZNF205O95201 554 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 HPXP02790 462 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 HK2P52789 917 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 AMPD2Q01433 879 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 HSP90AB2PQ58FF8 381 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 SLC35F1Q5T1Q4 408 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 FSTL4Q6MZW2 842 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 ABHD17CQ6PCB6 329 aa4.48□□□□□ -1.69
CD44-229ENST00000528672 FERMT3Q86UX7 667 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms