RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 TOP1P11387 765 aaKnown RBP27.81■■■□□ 2.04
CPSF1-202ENST00000527827 ADGRE1Q14246 886 aa27.81■■■□□ 2.04
CPSF1-202ENST00000527827 AKNAD1Q5T1N1 836 aa27.81■■■□□ 2.04
CPSF1-202ENST00000527827 ANKRD45Q5TZF3 282 aa27.81■■■□□ 2.04
CPSF1-202ENST00000527827 PPM1EQ8WY54 764 aa27.81■■■□□ 2.04
CPSF1-202ENST00000527827 NKX2-4Q9H2Z4 354 aa27.81■■■□□ 2.04
CPSF1-202ENST00000527827 ADD3Q9UEY8 706 aaKnown RBP27.81■■■□□ 2.04
CPSF1-202ENST00000527827 YBX2Q9Y2T7 364 aaKnown RBP27.81■■■□□ 2.04
CPSF1-202ENST00000527827 FRMPD2Q68DX3 1309 aaPredicted RBP27.81■■■□□ 2.04
CPSF1-202ENST00000527827 FGAP02671 866 aa27.8■■■□□ 2.04
CPSF1-202ENST00000527827 FAM227BQ96M60 508 aa27.8■■■□□ 2.04
CPSF1-202ENST00000527827 ALDH8A1Q9H2A2 487 aaPredicted RBP27.8■■■□□ 2.04
CPSF1-202ENST00000527827 GPCPD1Q9NPB8 672 aa27.8■■■□□ 2.04
CPSF1-202ENST00000527827 TOMM22Q9NS69 142 aa27.8■■■□□ 2.04
CPSF1-202ENST00000527827 TCP11L1Q9NUJ3 509 aa27.8■■■□□ 2.04
CPSF1-202ENST00000527827 LOC102724159A0A0B4J2E5 919 aa27.79■■■□□ 2.04
CPSF1-202ENST00000527827 A0A0D9SFI3 127 aa27.79■■■□□ 2.04
CPSF1-202ENST00000527827 RBM47A0AV96 593 aaKnown RBP27.79■■■□□ 2.04
CPSF1-202ENST00000527827 PWP2Q15269 919 aaKnown RBP27.79■■■□□ 2.04
CPSF1-202ENST00000527827 RRP12Q5JTH9 1297 aaKnown RBP27.79■■■□□ 2.04
CPSF1-202ENST00000527827 CLEC4DQ8WXI8 215 aa27.79■■■□□ 2.04
CPSF1-202ENST00000527827 WDR11Q9BZH6 1224 aa27.79■■■□□ 2.04
CPSF1-202ENST00000527827 CHD7Q9P2D1 2997 aa27.79■■■□□ 2.04
CPSF1-202ENST00000527827 PDE1AP54750 535 aa27.78■■■□□ 2.04
CPSF1-202ENST00000527827 SLC30A10Q6XR72 485 aa27.78■■■□□ 2.04
CPSF1-202ENST00000527827 SCLYQ96I15 445 aa27.78■■■□□ 2.04
CPSF1-202ENST00000527827 POLR3EQ9NVU0 708 aa27.78■■■□□ 2.04
CPSF1-202ENST00000527827 SCN10AQ9Y5Y9 1956 aa27.77■■■□□ 2.04
CPSF1-202ENST00000527827 PTPDC1A2A3K4 754 aa27.77■■■□□ 2.04
CPSF1-202ENST00000527827 PDHBP11177 359 aa27.77■■■□□ 2.04
CPSF1-202ENST00000527827 PURAQ00577 322 aaKnown RBP27.77■■■□□ 2.04
CPSF1-202ENST00000527827 MCMDC2Q4G0Z9 681 aa27.77■■■□□ 2.04
CPSF1-202ENST00000527827 RPUSD2Q8IZ73 545 aaKnown RBP27.77■■■□□ 2.04
CPSF1-202ENST00000527827 SLC28A3Q9HAS3 691 aa27.77■■■□□ 2.04
CPSF1-202ENST00000527827 TRMT13Q9NUP7 481 aaKnown RBP27.77■■■□□ 2.04
CPSF1-202ENST00000527827 SCN5AQ14524 2016 aa27.77■■■□□ 2.04
CPSF1-202ENST00000527827 ZMYM6O95789 1325 aa27.76■■■□□ 2.03
CPSF1-202ENST00000527827 RABGGTBP53611 331 aa27.76■■■□□ 2.03
CPSF1-202ENST00000527827 ZBTB47Q9UFB7 747 aaPredicted RBP27.76■■■□□ 2.03
CPSF1-202ENST00000527827 HSPD1P10809 573 aaKnown RBP27.75■■■□□ 2.03
CPSF1-202ENST00000527827 CYP2C9P11712 490 aa27.75■■■□□ 2.03
CPSF1-202ENST00000527827 CALML3P27482 149 aa27.75■■■□□ 2.03
CPSF1-202ENST00000527827 RNF207Q6ZRF8 634 aa27.75■■■□□ 2.03
CPSF1-202ENST00000527827 ZNF589Q86UQ0 364 aaPredicted RBP27.75■■■□□ 2.03
CPSF1-202ENST00000527827 SLC4A7Q9Y6M7 1214 aa27.75■■■□□ 2.03
CPSF1-202ENST00000527827 MUC3AQ02505 3323 aa27.74■■■□□ 2.03
CPSF1-202ENST00000527827 TNKSO95271 1327 aa27.74■■■□□ 2.03
CPSF1-202ENST00000527827 MYL3P08590 195 aa27.74■■■□□ 2.03
CPSF1-202ENST00000527827 CPT1AP50416 773 aa27.74■■■□□ 2.03
CPSF1-202ENST00000527827 HAND2P61296 217 aa27.74■■■□□ 2.03
CPSF1-202ENST00000527827 OR6J1Q8NGC5 347 aa27.74■■■□□ 2.03
CPSF1-202ENST00000527827 ATXN2LQ8WWM7 1075 aaKnown RBP27.74■■■□□ 2.03
CPSF1-202ENST00000527827 SUPT20HL2P0C7V6 817 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 SNHG28P0DPA3 235 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 MYOGP15173 224 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 IGFBP4P22692 258 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 EDNRBP24530 442 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 RRP1P56182 461 aaKnown RBP27.73■■■□□ 2.03
CPSF1-202ENST00000527827 RPS6P62753 249 aaKnown RBP27.73■■■□□ 2.03
CPSF1-202ENST00000527827 ZNF543Q08ER8 600 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 NMIQ13287 307 aaPredicted RBP27.73■■■□□ 2.03
CPSF1-202ENST00000527827 CCDC85BQ15834 202 aaPredicted RBP27.73■■■□□ 2.03
CPSF1-202ENST00000527827 TTC14Q96N46 770 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 MTG1Q9BT17 334 aaPredicted RBP27.73■■■□□ 2.03
CPSF1-202ENST00000527827 THEGQ9P2T0 379 aa27.73■■■□□ 2.03
CPSF1-202ENST00000527827 WDR19Q8NEZ3 1342 aa27.72■■■□□ 2.03
CPSF1-202ENST00000527827 TTLL4Q14679 1199 aa27.72■■■□□ 2.03
CPSF1-202ENST00000527827 TICAM2Q86XR7 235 aa27.72■■■□□ 2.03
CPSF1-202ENST00000527827 PNMA2Q9UL42 364 aa27.72■■■□□ 2.03
CPSF1-202ENST00000527827 PCDHA11Q9Y5I1 949 aa27.72■■■□□ 2.03
CPSF1-202ENST00000527827 ZBBXA8MT70 800 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 TNFRSF10AO00220 468 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 PDE4DQ08499 809 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 NBPF20Q3BBV1 942 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 TBC1D10CQ8IV04 446 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 COPS5Q92905 334 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 ASB2Q96Q27 587 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 CRBNQ96SW2 442 aa27.71■■■□□ 2.03
CPSF1-202ENST00000527827 NKRFO15226 690 aaKnown RBP eCLIP27.7■■■□□ 2.02
CPSF1-202ENST00000527827 PFKMP08237 780 aa27.7■■■□□ 2.02
CPSF1-202ENST00000527827 HDAC1Q13547 482 aaPredicted RBP27.7■■■□□ 2.02
CPSF1-202ENST00000527827 PPP2R5BQ15173 497 aa27.7■■■□□ 2.02
CPSF1-202ENST00000527827 PPP2R2DQ66LE6 453 aa27.7■■■□□ 2.02
CPSF1-202ENST00000527827 DNERQ8NFT8 737 aa27.7■■■□□ 2.02
CPSF1-202ENST00000527827 PPP1R13LQ8WUF5 828 aa27.7■■■□□ 2.02
CPSF1-202ENST00000527827 GPHNQ9NQX3 736 aaPredicted RBP27.7■■■□□ 2.02
CPSF1-202ENST00000527827 CCDC171Q6TFL3 1326 aa27.69■■■□□ 2.02
CPSF1-202ENST00000527827 ATP2A2P16615 1042 aaKnown RBP27.69■■■□□ 2.02
CPSF1-202ENST00000527827 MFSD6Q6ZSS7 791 aa27.69■■■□□ 2.02
CPSF1-202ENST00000527827 DEFB128Q7Z7B8 93 aa27.69■■■□□ 2.02
CPSF1-202ENST00000527827 SCFD2Q8WU76 684 aa27.69■■■□□ 2.02
CPSF1-202ENST00000527827 TANC1Q9C0D5 1861 aa27.68■■■□□ 2.02
CPSF1-202ENST00000527827 A6NJR5 290 aa27.68■■■□□ 2.02
CPSF1-202ENST00000527827 PCP11498 1178 aaKnown RBP27.68■■■□□ 2.02
CPSF1-202ENST00000527827 FAM47CQ5HY64 1035 aa27.68■■■□□ 2.02
CPSF1-202ENST00000527827 RAD50Q92878 1312 aa27.67■■■□□ 2.02
CPSF1-202ENST00000527827 NCOR1O75376 2440 aa27.67■■■□□ 2.02
CPSF1-202ENST00000527827 MRPS5P82675 430 aaKnown RBP27.67■■■□□ 2.02
CPSF1-202ENST00000527827 BRDTQ58F21 947 aaPredicted RBP27.67■■■□□ 2.02
CPSF1-202ENST00000527827 NFRKBQ6P4R8 1299 aa27.67■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms