RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 PCDHA8Q9Y5H6 950 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 SRPRBQ9Y5M8 271 aaKnown RBP21.48■■□□□ 1.03
VPS28-207ENST00000526977 HOXC10Q9NYD6 342 aa21.47■■□□□ 1.03
VPS28-207ENST00000526977 NOL7Q9UMY1 257 aaKnown RBP21.47■■□□□ 1.03
VPS28-207ENST00000526977 MORC2Q9Y6X9 1032 aaPredicted RBP21.47■■□□□ 1.03
VPS28-207ENST00000526977 SAMD1Q6SPF0 538 aaPredicted RBP21.46■■□□□ 1.03
VPS28-207ENST00000526977 C11orf57Q6ZUT1 292 aaPredicted RBP21.46■■□□□ 1.03
VPS28-207ENST00000526977 REXO1Q8N1G1 1221 aaKnown RBP21.46■■□□□ 1.03
VPS28-207ENST00000526977 ZNF579Q8NAF0 562 aaKnown RBP21.46■■□□□ 1.03
VPS28-207ENST00000526977 SLC38A10Q9HBR0 1119 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 ANO10Q9NW15 660 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 KCNH3Q9ULD8 1083 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 MYPNQ86TC9 1320 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 A0A087WWV3 80 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 CCDC194A0A1B0GVG4 234 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 ZBED4O75132 1171 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 TRAPPC10P48553 1259 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 USH1GQ495M9 461 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 SPECC1Q5M775 1068 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 CST9Q5W186 159 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 CCDC174Q6PII3 467 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 PIK3AP1Q6ZUJ8 805 aa21.46■■□□□ 1.03
VPS28-207ENST00000526977 CTDP1Q9Y5B0 961 aaPredicted RBP21.46■■□□□ 1.03
VPS28-207ENST00000526977 WNT7AO00755 349 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 ICAM1P05362 532 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 DSG3P32926 999 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 PLCB2Q00722 1185 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 IQCB1Q15051 598 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 FASTKD5Q7L8L6 764 aaKnown RBP21.45■■□□□ 1.02
VPS28-207ENST00000526977 KRT25Q7Z3Z0 450 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 ADAMTS5Q9UNA0 930 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 HOXA7P31268 230 aaPredicted RBP21.45■■□□□ 1.02
VPS28-207ENST00000526977 LONRF3Q496Y0 759 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 MCTP2Q6DN12 878 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 CCDC39Q9UFE4 941 aa21.45■■□□□ 1.02
VPS28-207ENST00000526977 MRPL11Q9Y3B7 192 aaKnown RBP21.45■■□□□ 1.02
VPS28-207ENST00000526977 VWA5AO00534 786 aa21.44■■□□□ 1.02
VPS28-207ENST00000526977 SNAPC2Q13487 334 aa21.44■■□□□ 1.02
VPS28-207ENST00000526977 ZNF174Q15697 407 aa21.44■■□□□ 1.02
VPS28-207ENST00000526977 GADL1Q6ZQY3 521 aa21.44■■□□□ 1.02
VPS28-207ENST00000526977 ABCB11O95342 1321 aa21.44■■□□□ 1.02
VPS28-207ENST00000526977 TTC38Q5R3I4 469 aa21.43■■□□□ 1.02
VPS28-207ENST00000526977 ZSCAN30Q86W11 494 aa21.43■■□□□ 1.02
VPS28-207ENST00000526977 RASGRP4Q8TDF6 673 aa21.43■■□□□ 1.02
VPS28-207ENST00000526977 BIN2Q9UBW5 565 aaPredicted RBP21.43■■□□□ 1.02
VPS28-207ENST00000526977 CLK2P49760 499 aaKnown RBP21.43■■□□□ 1.02
VPS28-207ENST00000526977 NONOQ15233 471 aaKnown RBP eCLIP21.43■■□□□ 1.02
VPS28-207ENST00000526977 FAM13BQ9NYF5 915 aa21.43■■□□□ 1.02
VPS28-207ENST00000526977 ZNF536O15090 1300 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 BMP15O95972 392 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 CLCN1P35523 988 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 OAZ1P54368 228 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 TREML2Q5T2D2 321 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 KRBA2Q6ZNG9 492 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 ATG4CQ96DT6 458 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 CSRNP2Q9H175 543 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 CCPG1Q9ULG6 757 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 AGTPBP1Q9UPW5 1226 aa21.42■■□□□ 1.02
VPS28-207ENST00000526977 KIF3CO14782 793 aa21.41■■□□□ 1.02
VPS28-207ENST00000526977 GJA5P36382 358 aa21.41■■□□□ 1.02
VPS28-207ENST00000526977 PABPC4Q13310 644 aaKnown RBP eCLIP21.41■■□□□ 1.021e-7■■■□□ 18.8
VPS28-207ENST00000526977 WNK4Q96J92 1243 aa21.41■■□□□ 1.02
VPS28-207ENST00000526977 JAKMIP3Q5VZ66 844 aa21.41■■□□□ 1.02
VPS28-207ENST00000526977 ELOA2Q8IYF1 753 aaPredicted RBP21.41■■□□□ 1.02
VPS28-207ENST00000526977 SMC1BQ8NDV3 1235 aa21.41■■□□□ 1.02
VPS28-207ENST00000526977 AGBL1Q96MI9 1066 aa21.41■■□□□ 1.02
VPS28-207ENST00000526977 PASKQ96RG2 1323 aa21.41■■□□□ 1.02
VPS28-207ENST00000526977 PIK3CDO00329 1044 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 MEIS2O14770 477 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 PTMAP06454 111 aaKnown RBP21.4■■□□□ 1.02
VPS28-207ENST00000526977 ZBTB48P10074 688 aaPredicted RBP21.4■■□□□ 1.02
VPS28-207ENST00000526977 GTF2A2P52657 109 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 USP49Q70CQ1 688 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 CPXCR1Q8N123 301 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 CNNM3Q8NE01 707 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.4■■□□□ 1.02
VPS28-207ENST00000526977 TUBE1Q9UJT0 475 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 PTPRFP10586 1907 aa21.4■■□□□ 1.02
VPS28-207ENST00000526977 ATP2A1O14983 1001 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 FOSP01100 380 aaPredicted RBP21.39■■□□□ 1.02
VPS28-207ENST00000526977 HUNKP57058 714 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 NLRP12P59046 1061 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 PTGDRQ13258 359 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 AP3B2Q13367 1082 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 MOGSQ13724 837 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 DHX40Q8IX18 779 aaKnown RBP21.39■■□□□ 1.02
VPS28-207ENST00000526977 FERMT2Q96AC1 680 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 RAVER2Q9HCJ3 691 aaKnown RBP21.39■■□□□ 1.02
VPS28-207ENST00000526977 TMEM260Q9NX78 707 aa21.39■■□□□ 1.02
VPS28-207ENST00000526977 SPDYE16A6NNV3 312 aaPredicted RBP21.39■■□□□ 1.01
VPS28-207ENST00000526977 BIN1O00499 593 aa21.39■■□□□ 1.01
VPS28-207ENST00000526977 POLR2DO15514 142 aaKnown RBP21.39■■□□□ 1.01
VPS28-207ENST00000526977 CETPP11597 493 aa21.39■■□□□ 1.01
VPS28-207ENST00000526977 IRX3P78415 501 aaPredicted RBP21.39■■□□□ 1.01
VPS28-207ENST00000526977 ATP2C1P98194 919 aaPredicted RBP21.39■■□□□ 1.01
VPS28-207ENST00000526977 MDM2Q00987 491 aaPredicted RBP21.39■■□□□ 1.01
VPS28-207ENST00000526977 ZRSR1Q15695 479 aaKnown RBP21.39■■□□□ 1.01
VPS28-207ENST00000526977 UBE2SQ16763 222 aa21.39■■□□□ 1.01
VPS28-207ENST00000526977 INF2Q27J81 1249 aa21.39■■□□□ 1.01
VPS28-207ENST00000526977 USP17L6PQ6QN14 398 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms