RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TLR3O15455 904 aaKnown RBP16.91■□□□□ 0.3
CPSF1-201ENST00000526271 ORC4O43929 436 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 FGBP02675 491 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 CYP2C9P11712 490 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 MX1P20591 662 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 ALDH5A1P51649 535 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-201ENST00000526271 PURAQ00577 322 aaKnown RBP16.91■□□□□ 0.3
CPSF1-201ENST00000526271 CCDC85BQ15834 202 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-201ENST00000526271 DUSP28Q4G0W2 176 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 IQSEC1Q6DN90 963 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 NOL8Q76FK4 1167 aaKnown RBP16.91■□□□□ 0.3
CPSF1-201ENST00000526271 SPRED2Q7Z698 418 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 FAM227BQ96M60 508 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 TMEM47Q9BQJ4 181 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 NACAP1Q9BZK3 213 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 CCPG1Q9ULG6 757 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 ISY1Q9ULR0 285 aaKnown RBP16.91■□□□□ 0.3
CPSF1-201ENST00000526271 Q9Y3F1 56 aa16.91■□□□□ 0.3
CPSF1-201ENST00000526271 TSPY2A6NKD2 308 aa16.9■□□□□ 0.3
CPSF1-201ENST00000526271 RFXAPO00287 272 aa16.9■□□□□ 0.3
CPSF1-201ENST00000526271 CABYRO75952 493 aa16.9■□□□□ 0.3
CPSF1-201ENST00000526271 KIAA1211Q6ZU35 1233 aa16.9■□□□□ 0.3
CPSF1-201ENST00000526271 ZNF589Q86UQ0 364 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-201ENST00000526271 COPS5Q92905 334 aa16.9■□□□□ 0.3
CPSF1-201ENST00000526271 NECAB3Q96P71 396 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-201ENST00000526271 CTAGE1Q96RT6 745 aa16.9■□□□□ 0.3
CPSF1-201ENST00000526271 VTA1Q9NP79 307 aa16.9■□□□□ 0.3
CPSF1-201ENST00000526271 FRMPD2Q68DX3 1309 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-201ENST00000526271 RANBP6O60518 1105 aaKnown RBP16.89■□□□□ 0.29
CPSF1-201ENST00000526271 ARIH2O95376 493 aa16.89■□□□□ 0.29
CPSF1-201ENST00000526271 FGAP02671 866 aa16.89■□□□□ 0.29
CPSF1-201ENST00000526271 EDNRBP24530 442 aa16.89■□□□□ 0.29
CPSF1-201ENST00000526271 IKQ13123 557 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-201ENST00000526271 ALX1Q15699 326 aa16.89■□□□□ 0.29
CPSF1-201ENST00000526271 ASB2Q96Q27 587 aa16.89■□□□□ 0.29
CPSF1-201ENST00000526271 CPVLQ9H3G5 476 aa16.89■□□□□ 0.29
CPSF1-201ENST00000526271 TNFRSF10AO00220 468 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 PDHBP11177 359 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 GPNMBQ14956 572 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 RAB30Q15771 203 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 SYDE2Q5VT97 1194 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 TBC1D10CQ8IV04 446 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 DCAF4Q8WV16 495 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 SYMPKQ92797 1274 aaKnown RBP16.88■□□□□ 0.29
CPSF1-201ENST00000526271 GAS2L1Q99501 681 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-201ENST00000526271 AP5M1Q9H0R1 490 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 GPCPD1Q9NPB8 672 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 THEGQ9P2T0 379 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 LAMA4Q16363 1823 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 KIAA1217Q5T5P2 1943 aa16.88■□□□□ 0.29
CPSF1-201ENST00000526271 COL4A4P53420 1690 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-201ENST00000526271 ERC2O15083 957 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 SLC3A2P08195 630 aaKnown RBP16.87■□□□□ 0.29
CPSF1-201ENST00000526271 SNHG28P0DPA3 235 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 CCDC96Q2M329 555 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 KRT40Q6A162 431 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 ATXN2LQ8WWM7 1075 aaKnown RBP16.87■□□□□ 0.29
CPSF1-201ENST00000526271 TBC1D5Q92609 795 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 WDR11Q9BZH6 1224 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 MSRAQ9UJ68 235 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 TNKSO95271 1327 aa16.87■□□□□ 0.29
CPSF1-201ENST00000526271 IGFBP4P22692 258 aa16.86■□□□□ 0.29
CPSF1-201ENST00000526271 TFF2Q03403 129 aa16.86■□□□□ 0.29
CPSF1-201ENST00000526271 TCTN1Q2MV58 587 aa16.86■□□□□ 0.29
CPSF1-201ENST00000526271 NBPF20Q3BBV1 942 aa16.86■□□□□ 0.29
CPSF1-201ENST00000526271 ADAMTS19Q8TE59 1207 aa16.86■□□□□ 0.29
CPSF1-201ENST00000526271 TCP11L1Q9NUJ3 509 aa16.86■□□□□ 0.29
CPSF1-201ENST00000526271 TOP1P11387 765 aaKnown RBP16.85■□□□□ 0.29
CPSF1-201ENST00000526271 BMP1P13497 986 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 PDE1AP54750 535 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 HAND2P61296 217 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 RPS6P62753 249 aaKnown RBP16.85■□□□□ 0.29
CPSF1-201ENST00000526271 ZNF543Q08ER8 600 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 DEFB128Q7Z7B8 93 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 SLC28A3Q9HAS3 691 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 COL20A1Q9P218 1284 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 PCDHA11Q9Y5I1 949 aa16.85■□□□□ 0.29
CPSF1-201ENST00000526271 MYH6P13533 1939 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 PTPDC1A2A3K4 754 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 A6NJR5 290 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 MYL3P08590 195 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 HSPD1P10809 573 aaKnown RBP16.84■□□□□ 0.29
CPSF1-201ENST00000526271 COL9A1P20849 921 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 CALML3P27482 149 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 NMIQ13287 307 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-201ENST00000526271 LRRFIP1Q32MZ4 808 aaKnown RBP16.84■□□□□ 0.29
CPSF1-201ENST00000526271 RRP12Q5JTH9 1297 aaKnown RBP16.84■□□□□ 0.29
CPSF1-201ENST00000526271 SLC4A7Q9Y6M7 1214 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 NEDD4P46934 1319 aa16.84■□□□□ 0.29
CPSF1-201ENST00000526271 MYH7BA7E2Y1 1941 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 ZEB2O60315 1214 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 CA3P07451 260 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 ATP2A2P16615 1042 aaKnown RBP16.83■□□□□ 0.28
CPSF1-201ENST00000526271 KCNQ1P51787 676 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 PPP2R2DQ66LE6 453 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 CCDC62Q6P9F0 684 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 OR6J1Q8NGC5 347 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 DHX38Q92620 1227 aaKnown RBP16.83■□□□□ 0.28
CPSF1-201ENST00000526271 KAT2BQ92831 832 aa16.83■□□□□ 0.28
CPSF1-201ENST00000526271 EVI5LQ96CN4 794 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms