RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 ATG9AQ7Z3C6 839 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 CACNA2D4Q7Z3S7 1137 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 KIF2BQ8N4N8 673 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 CCDC155Q8N6L0 562 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 APPBP2Q92624 585 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 MMADHCQ9H3L0 296 aaPredicted RBP11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 UBAP1Q9NZ09 502 aa11.15□□□□□ -0.62
PDGFRB-207ENST00000520579 USP6P35125 1406 aa11.15□□□□□ -0.63
PDGFRB-207ENST00000520579 FOXP2O15409 715 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 PTGISQ16647 500 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 ZNF280DQ6N043 979 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 SLC30A9Q6PML9 568 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 NCAPG2Q86XI2 1143 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 CCDC170Q8IYT3 715 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 RAPGEF4Q8WZA2 1011 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 NOC4LQ9BVI4 516 aaKnown RBP11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 VIPAS39Q9H9C1 493 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 NRKQ7Z2Y5 1582 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 DNM1LO00429 736 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 TUBBP07437 444 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 EIF4A3P38919 411 aaKnown RBP11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 AMOTQ4VCS5 1084 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 KANK3Q6NY19 840 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 MAGEB6Q8N7X4 407 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 CYFIP2Q96F07 1278 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 OSBPL9Q96SU4 736 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 AGXT2Q9BYV1 514 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 ZNF233A6NK53 670 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 VIMP08670 466 aaKnown RBP11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 FNTAP49354 379 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 NLRP5P59047 1200 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 GFPT1Q06210 699 aaPredicted RBP11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 PDIA6Q15084 440 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 KRT71Q3SY84 523 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 NSMCE1Q8WV22 266 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 LMBR1Q8WVP7 490 aa11.14□□□□□ -0.63
PDGFRB-207ENST00000520579 PIK3C2BO00750 1634 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 MYL1P05976 194 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 SLCO1A2P46721 670 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 TUBB2AQ13885 445 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 RBM26Q5T8P6 1007 aaKnown RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 MFSD6Q6ZSS7 791 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 MB21D1Q8N884 522 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 TUBB2BQ9BVA1 445 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 PREX1Q8TCU6 1659 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 LTKP29376 864 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 CTNNA1P35221 906 aaKnown RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 IL15P40933 162 aaPredicted RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 MAGEA10P43363 369 aaPredicted RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 WDR59Q6PJI9 974 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 DZIP1Q86YF9 867 aaKnown RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 AMOTL1Q8IY63 956 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 PRCCQ92733 491 aaPredicted RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 EPN3Q9H201 632 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 CEP131Q9UPN4 1083 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 MYH8P13535 1937 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 DCDC2CA8MYV0 355 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 EPHB4P54760 987 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 MYBPC2Q14324 1141 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 PREPLQ4J6C6 727 aaPredicted RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 LDHAL6AQ6ZMR3 332 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 SAPCD2Q86UD0 394 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 AENQ8WTP8 325 aaKnown RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 HVCN1Q96D96 273 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 TUBGCP2Q9BSJ2 902 aa11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 SRPRBQ9Y5M8 271 aaKnown RBP11.13□□□□□ -0.63
PDGFRB-207ENST00000520579 PLEKHG3A1L390 1219 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 DIAPH2O60879 1101 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 SMIM24O75264 130 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 PLEKHA8P1O95397 391 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 DHX9Q08211 1270 aaKnown RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 HAUS3Q68CZ6 603 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 CACNA2D3Q8IZS8 1091 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 SDR42E1Q8WUS8 393 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 ALS2CR12Q96Q35 445 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 ZHX3Q9H4I2 956 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 PIH1D3Q9NQM4 214 aaKnown RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 FAM217BQ9NTX9 383 aaPredicted RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 HYOU1Q9Y4L1 999 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 RICTORQ6R327 1708 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 RPN1P04843 607 aaKnown RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 SARSP49591 514 aaKnown RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 ERFP50548 548 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 CHRNA2Q15822 529 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 TTC38Q5R3I4 469 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 DZIP3Q86Y13 1208 aaKnown RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 CCDC51Q96ER9 411 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 TRIM11Q96F44 468 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 PLEKHG4BQ96PX9 1271 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 RANBP17Q9H2T7 1088 aaKnown RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 VCPKMTQ9H867 229 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 LY9Q9HBG7 655 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 TBC1D2BQ9UPU7 963 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 THRAP3Q9Y2W1 955 aaKnown RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 NUTM2BA6NNL0 878 aaPredicted RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 NUTM2EB1AL46 878 aaPredicted RBP11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 PSMD14O00487 310 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 CEP104O60308 925 aa11.12□□□□□ -0.63
PDGFRB-207ENST00000520579 MDH1P40925 334 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms