RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 FPGSQ05932 587 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ANGEL2Q5VTE6 544 aaKnown RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 BTNL9Q6UXG8 535 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ZNF713Q8N859 430 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 DDX27Q96GQ7 796 aaKnown RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 MS4A4AQ96JQ5 239 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 TM6SF1Q9BZW5 370 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 USP40Q9NVE5 1235 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 LRP2BPQ9P2M1 347 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 DIS3Q9Y2L1 958 aaKnown RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 AFG3L2Q9Y4W6 797 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 USP34Q70CQ2 3546 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 RBM47A0AV96 593 aaKnown RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 C1QTNF9BB2RNN3 333 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 C1QTNF9P0C862 333 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 CSRP3P50461 194 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 SNAPC2Q13487 334 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 KRT32Q14532 448 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 RASA3Q14644 834 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 MAP3K21Q5TCX8 1036 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 OLFM4Q6UX06 510 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 TMTC2Q8N394 836 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 NEDD1Q8NHV4 660 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 GMCL1Q96IK5 515 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 LZTS2Q9BRK4 669 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 ARHGAP39Q9C0H5 1083 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 DCP1AQ9NPI6 582 aaPredicted RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 CCDC171Q6TFL3 1326 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 USP17L5A8MUK1 530 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 SDSP20132 328 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 CYP7A1P22680 504 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 EVCP57679 992 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 RTP1P59025 263 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 MOGSQ13724 837 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 PSRC1Q6PGN9 363 aaPredicted RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 DGKHQ86XP1 1220 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 TEX11Q8IYF3 940 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 CCDC105Q8IYK2 499 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 DCAF4Q8WV16 495 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 SNCAIPQ9Y6H5 919 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 ZNF532Q9HCE3 1301 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 C2CD3Q4AC94 2353 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 GSG1L2A8MUP6 293 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 WDR46O15213 610 aaKnown RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 NEFLP07196 543 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 SNHG28P0DPA3 235 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 PRDX5P30044 214 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 RGS3P49796 1198 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 ZNF200P98182 395 aaPredicted RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 TTLL12Q14166 644 aaPredicted RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 SMAD2Q15796 467 aaKnown RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 CCDC96Q2M329 555 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 COLEC12Q5KU26 742 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 N4BP2L1Q5TBK1 243 aaPredicted RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 CASC1Q6TDU7 716 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 FAM160B2Q86V87 743 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 MAML2Q8IZL2 1156 aaPredicted RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 EXOC6Q8TAG9 804 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 JARID2Q92833 1246 aaPredicted RBP3.36□□□□□ -1.87
MCF2-208ENST00000519895 NEUROD6Q96NK8 337 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 KRT23Q9C075 422 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 KANSL2Q9H9L4 492 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 ANKMY1Q9P2S6 941 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 MUTYHQ9UIF7 546 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 SERPINB13Q9UIV8 391 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 AGTPBP1Q9UPW5 1226 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 EXOC6BQ9Y2D4 811 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 CSADQ9Y600 493 aa3.36□□□□□ -1.87
MCF2-208ENST00000519895 MYO9AB2RTY4 2548 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 SPTLC1O15269 473 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 SGSM2O43147 1006 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 PDE4BQ07343 736 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 PPIGQ13427 754 aaKnown RBP eCLIP3.35□□□□□ -1.87
MCF2-208ENST00000519895 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 SH3BP5LQ7L8J4 393 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 EFCAB3Q8N7B9 438 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 MAGEB6Q8N7X4 407 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 KLHDC4Q8TBB5 520 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 MAP4K1Q92918 833 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 PARK7Q99497 189 aaKnown RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 AGXT2Q9BYV1 514 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 PDLIM7Q9NR12 457 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 RAI14Q9P0K7 980 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 WASF3Q9UPY6 502 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 TMX2Q9Y320 296 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 CDC45O75419 566 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 FRAT2O75474 233 aaPredicted RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 SLC25A27O95847 323 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 IGHDP01880 384 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 XRCC5P13010 732 aaKnown RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 PTPRAP18433 802 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 PBX2P40425 430 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 SLC9C2Q5TAH2 1124 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 KIAA0825Q8IV33 1275 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 CRACR2BQ8N4Y2 399 aaPredicted RBP3.35□□□□□ -1.87
MCF2-208ENST00000519895 CYP2W1Q8TAV3 490 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 MORC4Q8TE76 937 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 WBP1Q96G27 269 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 SIL1Q9H173 461 aa3.35□□□□□ -1.87
MCF2-208ENST00000519895 GLT8D2Q9H1C3 349 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms