RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 DDX41Q9UJV9 622 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAMTS6Q9UKP5 1117 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 HCN2Q9UL51 889 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLAGL2Q9UPG8 496 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 DIS3Q9Y2L1 958 aaKnown RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 COL4A3BPQ9Y5P4 624 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 AK5Q9Y6K8 562 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 CARMIL2Q6F5E8 1435 aa0.77□□□□□ -2.29
RNU4-54P-201ENST00000516428 NPHP3-ACAD11A0A0J9YXS1 232 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MROH6A6NGR9 719 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC22A31A6NKX4 558 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 NUDT19A8MXV4 375 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 C1QTNF3-AMACRE9PGA6 284 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 F8W031 263 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ENC1O14682 589 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 U2SURPO15042 1029 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 KIF3BO15066 747 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MUSKO15146 869 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 DYNC1LI2O43237 492 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LAMTOR5O43504 91 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRC1O43663 620 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SIGLEC6O43699 453 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CREB3O43889 395 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SH3BP5O60239 455 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CUTAO60888 179 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAMTS4O75173 837 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PEX14O75381 377 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 DGKIO75912 1065 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 RECQL4O94761 1208 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CPP00450 1065 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLATP00750 562 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FSHBP01225 129 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 S100BP04271 92 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 NEFMP07197 916 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 HSP90AA1P07900 732 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADH4P08319 380 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 GSTM1P09488 218 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PDGFRBP09619 1106 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FGRP09769 529 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MSL3P1P0C860 447 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 INSRRP14616 1297 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATF4P18848 351 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAKP20794 623 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TACR2P21452 398 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 BMP6P22004 513 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 VIPR1P32241 457 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PTGS2P35354 604 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPS19P39019 145 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 BUD31P41223 144 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 GJA8P48165 433 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF143P52747 638 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATXN1P54253 815 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SESN2P58004 480 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 INHBEP58166 350 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 YBX1P67809 324 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FOXO4P98177 505 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 AMPD2Q01433 879 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 EXOSC10Q01780 885 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 RING1Q06587 406 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPIRE1Q08AE8 756 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 APOBRQ0VD83 1088 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAAP100Q0VG06 881 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 EFEMP1Q12805 493 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAP3K12Q12852 859 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 OS9Q13438 667 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 HDAC1Q13547 482 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MTMR3Q13615 1198 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 HLTFQ14527 1009 aaKnown RBP eCLIP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 BMS1Q14692 1282 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CBX2Q14781 532 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRKD1Q15139 912 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 VPS72Q15906 364 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLEKHG6Q3KR16 790 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LONRF3Q496Y0 759 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLEKHG4Q58EX7 1191 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZMAT1Q5H9K5 638 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 RALGPS1Q5JS13 557 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 GJC2Q5T442 439 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 NT5DC1Q5TFE4 455 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FYB2Q5VWT5 728 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBXW10Q5XX13 1052 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPTY2D1Q68D10 685 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 HEATR6Q6AI08 1181 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCSAPQ6IQ19 270 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LRFN4Q6PJG9 635 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LCNL1Q6ZST4 164 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TSHZ1Q6ZSZ6 1077 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 HDGFL2Q7Z4V5 671 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 APBB1IPQ7Z5R6 666 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 B3GNT8Q7Z7M8 397 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 NLRX1Q86UT6 975 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 JAZF1Q86VZ6 243 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPFIBP1Q86W92 1011 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LDHDQ86WU2 507 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM129CQ86XR2 697 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MCF2L2Q86YR7 1114 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZC3H7AQ8IWR0 971 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SIRT2Q8IXJ6 389 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 GSPT2Q8IYD1 628 aaKnown RBP0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms