RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 SMPD1P17405 629 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 MCM5P33992 734 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 TRIM60Q495X7 471 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 TAPT1Q6NXT6 567 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 PPP4R2Q9NY27 417 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 COL20A1Q9P218 1284 aa13.38□□□□□ -0.27
VCAN-212ENST00000515397 hCG_1642624A0A1W2PR95 340 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 DUSP11O75319 330 aaKnown RBP13.37□□□□□ -0.27
VCAN-212ENST00000515397 CFBP00751 764 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 MDM2Q00987 491 aaPredicted RBP13.37□□□□□ -0.27
VCAN-212ENST00000515397 GNASQ5JWF2 1037 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 ZNF654Q8IZM8 581 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 CCDC82Q8N4S0 544 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 KLHDC9Q8NEP7 349 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 SYTL5Q8TDW5 730 aaPredicted RBP13.37□□□□□ -0.27
VCAN-212ENST00000515397 VTI1AQ96AJ9 217 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 ZFP91Q96JP5 570 aaPredicted RBP13.37□□□□□ -0.27
VCAN-212ENST00000515397 PHF24Q9UPV7 400 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 PCDHA1Q9Y5I3 950 aa13.37□□□□□ -0.27
VCAN-212ENST00000515397 A0A1W2PQ45 241 aaPredicted RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 A0A1W2PQY0 241 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 CCDC69A6NI79 296 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 OPLAHO14841 1288 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 CTAGE5O15320 804 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 PLEKHA8P1O95397 391 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 CENPBP07199 599 aaPredicted RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 HOXA13P31271 388 aaPredicted RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 MAGEA10P43363 369 aaPredicted RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 ACLYP53396 1101 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 TLE2Q04725 743 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 CCSAPQ6IQ19 270 aaPredicted RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 SH3RF1Q7Z6J0 888 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 MTMR8Q96EF0 704 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 NEK1Q96PY6 1258 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 AMNQ9BXJ7 453 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 RIOX1Q9H6W3 641 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 PRDM5Q9NQX1 630 aaPredicted RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 ADD3Q9UEY8 706 aaKnown RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 MRPL11Q9Y3B7 192 aaKnown RBP13.36□□□□□ -0.27
VCAN-212ENST00000515397 ABCB11O95342 1321 aa13.36□□□□□ -0.27
VCAN-212ENST00000515397 FRMPD3Q5JV73 1810 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 ZBTB5O15062 677 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 PQBP1O60828 265 aaKnown RBP13.35□□□□□ -0.27
VCAN-212ENST00000515397 ASGR1P07306 291 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 EIF2AK2P19525 551 aaKnown RBP13.35□□□□□ -0.27
VCAN-212ENST00000515397 GJA9P57773 515 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 PDE4DQ08499 809 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 IQSEC1Q6DN90 963 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 SRBD1Q8N5C6 995 aaKnown RBP13.35□□□□□ -0.27
VCAN-212ENST00000515397 MORC4Q8TE76 937 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 PPP1R13LQ8WUF5 828 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 COPS5Q92905 334 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 WDR11Q9BZH6 1224 aa13.35□□□□□ -0.27
VCAN-212ENST00000515397 GNEQ9Y223 722 aaKnown RBP13.35□□□□□ -0.27
VCAN-212ENST00000515397 EXOSC10Q01780 885 aaKnown RBP13.34□□□□□ -0.27
VCAN-212ENST00000515397 RNF20Q5VTR2 975 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 CXCL17Q6UXB2 119 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 TLK2Q86UE8 772 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 RGS22Q8NE09 1264 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 CTCFLQ8NI51 663 aaPredicted RBP13.34□□□□□ -0.27
VCAN-212ENST00000515397 TMEM87BQ96K49 555 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 RMDN3Q96TC7 470 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 AP5M1Q9H0R1 490 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 UPF3AQ9H1J1 476 aaKnown RBP13.34□□□□□ -0.27
VCAN-212ENST00000515397 PRO3102Q9H379 93 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 SPC25Q9HBM1 224 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 VTA1Q9NP79 307 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 STARD7Q9NQZ5 370 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 PNMA2Q9UL42 364 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 BRPF3Q9ULD4 1205 aa13.34□□□□□ -0.27
VCAN-212ENST00000515397 LCTP09848 1927 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 PNMA6FA0A0J9YX94 578 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 TRIM43BA6NCK2 446 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 SORBS3O60504 671 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 ARHGEF16Q5VV41 709 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 SEPT14Q6ZU15 432 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 FCHSD1Q86WN1 690 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 MICU3Q86XE3 530 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 MCF2L2Q86YR7 1114 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 TRIM43Q96BQ3 446 aaPredicted RBP13.33□□□□□ -0.28
VCAN-212ENST00000515397 GDF15Q99988 308 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 TSEN34Q9BSV6 310 aaKnown RBP13.33□□□□□ -0.28
VCAN-212ENST00000515397 NAP1L2Q9ULW6 460 aaPredicted RBP13.33□□□□□ -0.28
VCAN-212ENST00000515397 SNX14Q9Y5W7 946 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 SLC12A7Q9Y666 1083 aa13.33□□□□□ -0.28
VCAN-212ENST00000515397 DDAH1O94760 285 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 ARIH2O95376 493 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 MYCLP12524 364 aaPredicted RBP13.32□□□□□ -0.28
VCAN-212ENST00000515397 EDNRBP24530 442 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 ITGB8P26012 769 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 LIFRP42702 1097 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 PSMC6P62333 389 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 FSCN1Q16658 493 aaKnown RBP13.32□□□□□ -0.28
VCAN-212ENST00000515397 LY6KQ17RY6 165 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 DUSP28Q4G0W2 176 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 DHX32Q7L7V1 743 aaKnown RBP13.32□□□□□ -0.28
VCAN-212ENST00000515397 TMTC2Q8N394 836 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 DNERQ8NFT8 737 aa13.32□□□□□ -0.28
VCAN-212ENST00000515397 JAKMIP1Q96N16 626 aaKnown RBP13.32□□□□□ -0.28
VCAN-212ENST00000515397 MOXD2PA6NHM9 499 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms