RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CNTNAP5Q8WYK1 1306 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 hCG_1984214I3L0E3 225 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 CPLX1O14810 134 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 IFNAR1P17181 557 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 CALML3P27482 149 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 CYP2C19P33261 490 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 CCT2P78371 535 aaKnown RBP16.47■□□□□ 0.23
NUP54-216ENST00000514901 AKAP17AQ02040 695 aaKnown RBP16.47■□□□□ 0.23
NUP54-216ENST00000514901 MTFR1Q15390 333 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 TEX2Q8IWB9 1127 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 ZNF713Q8N859 430 aaPredicted RBP16.47■□□□□ 0.23
NUP54-216ENST00000514901 TBC1D32Q96NH3 1257 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 KIF2CQ99661 725 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 SLKQ9H2G2 1235 aaPredicted RBP16.47■□□□□ 0.23
NUP54-216ENST00000514901 TPCN1Q9ULQ1 816 aa16.47■□□□□ 0.23
NUP54-216ENST00000514901 PLXNA1Q9UIW2 1896 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 SOWAHBA6NEL2 793 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 PRPF3O43395 683 aaKnown RBP16.46■□□□□ 0.23
NUP54-216ENST00000514901 PFKFB2O60825 505 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 GJB1P08034 283 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 TRIM32Q13049 653 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 FGD4Q96M96 766 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 LARP6Q9BRS8 491 aaKnown RBP16.46■□□□□ 0.23
NUP54-216ENST00000514901 UNC93B1Q9H1C4 597 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 PAK6Q9NQU5 681 aaPredicted RBP16.46■□□□□ 0.23
NUP54-216ENST00000514901 CNPY2Q9Y2B0 182 aa16.46■□□□□ 0.23
NUP54-216ENST00000514901 GCOM1H8Y6P7 765 aaPredicted RBP16.45■□□□□ 0.22
NUP54-216ENST00000514901 MSCO60682 206 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 CDKL5O76039 1030 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 CFBP00751 764 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 MYCP01106 439 aaPredicted RBP16.45■□□□□ 0.22
NUP54-216ENST00000514901 POLR2MP0CAP2 368 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 HSD17B4P51659 736 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 NTRK3Q16288 839 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 SLC30A10Q6XR72 485 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 TRIM22Q8IYM9 498 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 SYTL5Q8TDW5 730 aaPredicted RBP16.45■□□□□ 0.22
NUP54-216ENST00000514901 TBC1D5Q92609 795 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 CUL5Q93034 780 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 RNF26Q9BY78 433 aaPredicted RBP16.45■□□□□ 0.22
NUP54-216ENST00000514901 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.45■□□□□ 0.22
NUP54-216ENST00000514901 GLT8D2Q9H1C3 349 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 NCOA5Q9HCD5 579 aaKnown RBP16.45■□□□□ 0.22
NUP54-216ENST00000514901 LIMCH1Q9UPQ0 1083 aa16.45■□□□□ 0.22
NUP54-216ENST00000514901 hCG_1642624A0A1W2PR95 340 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 OPLAHO14841 1288 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 SNAI1O95863 264 aaPredicted RBP16.44■□□□□ 0.22
NUP54-216ENST00000514901 CYBAP13498 195 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 SSRP1Q08945 709 aaKnown RBP16.44■□□□□ 0.22
NUP54-216ENST00000514901 STK3Q13188 491 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 PFKFB3Q16875 520 aaPredicted RBP16.44■□□□□ 0.22
NUP54-216ENST00000514901 PPP1R18Q6NYC8 613 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 ARMCX2Q7L311 632 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 HEATR3Q7Z4Q2 680 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 MORC4Q8TE76 937 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 NSUN6Q8TEA1 469 aaKnown RBP16.44■□□□□ 0.22
NUP54-216ENST00000514901 IWS1Q96ST2 819 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 ABHD16BQ9H3Z7 469 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 PSTPIP2Q9H939 334 aa16.44■□□□□ 0.22
NUP54-216ENST00000514901 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.44■□□□□ 0.22
NUP54-216ENST00000514901 PIK3CDO00329 1044 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 ST18O60284 1047 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 SCG2P13521 617 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 GJA8P48165 433 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 ALDH5A1P51649 535 aaPredicted RBP16.43■□□□□ 0.22
NUP54-216ENST00000514901 SCRN1Q12765 414 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 CCDC12Q8WUD4 166 aaPredicted RBP16.43■□□□□ 0.22
NUP54-216ENST00000514901 ZSCAN31Q96LW9 406 aaPredicted RBP16.43■□□□□ 0.22
NUP54-216ENST00000514901 RMDN3Q96TC7 470 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 SLC26A6Q9BXS9 759 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 BARHL2Q9NY43 387 aa16.43■□□□□ 0.22
NUP54-216ENST00000514901 SEPT4O43236 478 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 SGPL1O95470 568 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 CNGA1P29973 690 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 CCND3P30281 292 aaPredicted RBP16.42■□□□□ 0.22
NUP54-216ENST00000514901 NAPAP54920 295 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 ACVR2BQ13705 512 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 ME3Q16798 604 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 PRAMEF19Q5SWL8 479 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 WWC2Q6AWC2 1192 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 TRPV1Q8NER1 839 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 SMARCC2Q8TAQ2 1214 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 PHKBQ93100 1093 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 DEFB118Q96PH6 123 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 PURBQ96QR8 312 aaKnown RBP16.42■□□□□ 0.22
NUP54-216ENST00000514901 TAAR1Q96RJ0 339 aa16.42■□□□□ 0.22
NUP54-216ENST00000514901 STXBP3O00186 592 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 TFRCP02786 760 aaKnown RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 ZNF865P0CJ78 1059 aaPredicted RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 EDNRBP24530 442 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 HOXA13P31271 388 aaPredicted RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 PDE4DQ08499 809 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 ARHGEF16Q5VV41 709 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 NOL8Q76FK4 1167 aaKnown RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 FAM177A1Q8N128 213 aaPredicted RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 U2AF1L4Q8WU68 220 aaKnown RBP16.41■□□□□ 0.22
NUP54-216ENST00000514901 GPKOWQ92917 476 aaPredicted RBP eCLIP16.41■□□□□ 0.22
NUP54-216ENST00000514901 GTF3C6Q969F1 213 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 CRISPLD2Q9H0B8 497 aa16.41■□□□□ 0.22
NUP54-216ENST00000514901 VTA1Q9NP79 307 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms