RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KIF11P52732 1056 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 APBA1Q02410 837 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 PPP1R7Q15435 360 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 PFKFB3Q16875 520 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 EFCAB13Q8IY85 973 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 TBCKQ8TEA7 893 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 CCDC77Q9BR77 488 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 KRIT1O00522 736 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 NMT2O60551 498 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 ATP2C1P98194 919 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 ADAM9Q13443 819 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 SEL1L2Q5TEA6 688 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 DYNLL2Q96FJ2 89 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 NDST4Q9H3R1 872 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 KCNK9Q9NPC2 374 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 GGA1Q9UJY5 639 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 ZNF804BA4D1E1 1349 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 UBE2Q2LH0YL09 131 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 USP14P54578 494 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 IRX5P78411 483 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 MECOMQ03112 1051 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 SMCR8Q8TEV9 937 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 U2AF1L4Q8WU68 220 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 ARMCX3Q9UH62 379 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 KDM3AQ9Y4C1 1321 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 A0A087WUV0 522 aaPredicted RBP9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 ZBTB22O15209 634 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 CHMP2AO43633 222 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 GCNT3O95395 438 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 XRCC5P13010 732 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 DPYDQ12882 1025 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 HOOK3Q86VS8 718 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 GSPT2Q8IYD1 628 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 MAP3K14Q99558 947 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 EPB41L4AQ9HCS5 686 aaPredicted RBP9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 LIMA1Q9UHB6 759 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 PCDHB13Q9Y5F0 798 aa9.27□□□□□ -0.92
LIMCH1-216ENST00000512820 CYP2D6P10635 497 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 ERFEQ4G0M1 354 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 GRIPAP1Q4V328 841 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 LRRC47Q8N1G4 583 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 LRRN4CLQ8ND94 238 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 CHP1Q99653 195 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 DDX25Q9UHL0 483 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 PNPLA7Q6ZV29 1317 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 FAM170AA1A519 330 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 USP17L3A6NCW0 530 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 USP17L4A6NCW7 530 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 CTNNA2P26232 953 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 GGCXP38435 758 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 SLC1A4P43007 532 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 USP17L1Q7RTZ2 530 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 SPATS2Q86XZ4 545 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 ELOA2Q8IYF1 753 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 AMFRQ9UKV5 643 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 IFT172Q9UG01 1749 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 TBC1D8O95759 1140 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 FTCDO95954 541 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 ATP1A1P05023 1023 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 SF3A3Q12874 501 aaKnown RBP eCLIP9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 ZNF512BQ96KM6 892 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 CTTNBP2NLQ9P2B4 639 aa9.27□□□□□ -0.93
LIMCH1-216ENST00000512820 ANO9A1A5B4 782 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 PP2D1A8MPX8 630 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 SPOPO43791 374 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 BTDP43251 543 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 FKBP3Q00688 224 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 TRAPPC3LQ5T215 181 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 PSTPIP2Q9H939 334 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 RIC8AQ9NPQ8 531 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 ATP6V0A2Q9Y487 856 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 DGKHQ86XP1 1220 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 PHF20Q9BVI0 1012 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 SH3GLB2Q9NR46 395 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 STK17AQ9UEE5 414 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 SALL1Q9NSC2 1324 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 H2AFZP0C0S5 128 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 STAT1P42224 750 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 NNTQ13423 1086 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 MFSD14BQ5SR56 506 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 ALS2CLQ60I27 953 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 H2AFVQ71UI9 128 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 USP37Q86T82 979 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 MYCT1Q8N699 235 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 UBL4BQ8N7F7 174 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 ZNF622Q969S3 477 aaKnown RBP eCLIP9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 PIGSQ96S52 555 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 DPH5Q9H2P9 285 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 RNF14Q9UBS8 474 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 GYPCP04921 128 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 CYP19A1P11511 503 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 ABCB4P21439 1286 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 GJC1P36383 396 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 MAGEA9P43362 315 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 USP17L2Q6R6M4 530 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 BICD1Q96G01 975 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 RBM17Q96I25 401 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 STIM2Q9P246 746 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 KIAA1024Q9UPX6 916 aa9.26□□□□□ -0.93
LIMCH1-216ENST00000512820 ITIH6Q6UXX5 1313 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms