RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 GTPBP4Q9BZE4 634 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SYNPO2Q9UMS6 1093 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 TMX2Q9Y320 296 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 MYH4Q9Y623 1939 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 F5H6K3 240 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 STX10O60499 249 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SNHG28P0DPA3 235 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 IREB2P48200 963 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 TRAPPC10P48553 1259 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 KLRC3Q07444 240 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 TTLL12Q14166 644 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 NAA30Q147X3 362 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SLFN13Q68D06 897 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 HOMER1Q86YM7 354 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SRBD1Q8N5C6 995 aaKnown RBP18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 GMCL1P1Q8NEA9 526 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SHISA4Q96DD7 197 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 SH2D4AQ9H788 454 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 VPS54Q9P1Q0 977 aa18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 FRMPD2Q68DX3 1309 aaPredicted RBP18.12■□□□□ 0.49
SQSTM1-213ENST00000510187 TRAF5O00463 557 aa18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 CDK11BP21127 795 aaKnown RBP18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 MAP3K9P80192 1104 aa18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 DMTNQ08495 405 aa18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 ASPRV1Q53RT3 343 aa18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 REXO1L1PQ8IX06 675 aa18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 GOPCQ9HD26 462 aa18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.11■□□□□ 0.498e-7■□□□□ 10.8
SQSTM1-213ENST00000510187 CNTNAP5Q8WYK1 1306 aa18.11■□□□□ 0.49
SQSTM1-213ENST00000510187 KLRF2D3W0D1 207 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 NDUFB10O96000 172 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 ZSCAN20P17040 1043 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 PTPRAP18433 802 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 SLC1A4P43007 532 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 CCDC96Q2M329 555 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 NOL9Q5SY16 702 aaKnown RBP18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 TRIM65Q6PJ69 517 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 DCAF4Q8WV16 495 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 GSDMAQ96QA5 445 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 BAG1Q99933 345 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 LZTS2Q9BRK4 669 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 V9GY48 417 aaPredicted RBP18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 ATAD5Q96QE3 1844 aa18.1■□□□□ 0.49
SQSTM1-213ENST00000510187 A0A1B0GTH6 734 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 ZNF543Q08ER8 600 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 VGLL4Q14135 290 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 ELF2Q15723 593 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 ZYXQ15942 572 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 GPATCH4Q5T3I0 446 aaKnown RBP18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 SPATA1Q5VX52 437 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 ZNF408Q9H9D4 720 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 GPCPD1Q9NPB8 672 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 CSADQ9Y600 493 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 DOCK1Q14185 1865 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 ATP2C1P98194 919 aaPredicted RBP18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 NR1I3Q14994 352 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 NPY5RQ15761 445 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 KMT5BQ4FZB7 885 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 TTC38Q5R3I4 469 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 MOB2Q70IA6 237 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 KCTD1Q719H9 257 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 SPICE1Q8N0Z3 855 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 DHX58Q96C10 678 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 PAGE5Q96GU1 130 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 GMCL1Q96IK5 515 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 AS3MTQ9HBK9 375 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 DNAI1Q9UI46 699 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 PPP2R2CQ9Y2T4 447 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 ZHX2Q9Y6X8 837 aa18.09■□□□□ 0.49
SQSTM1-213ENST00000510187 SPDYE4A6NLX3 237 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 ATP2B1P20020 1258 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 CUL4BQ13620 913 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 USP49Q70CQ1 688 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 ARMC9Q7Z3E5 817 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 GRAMD1CQ8IYS0 662 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 PDILTQ8N807 584 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 TC2NQ8N9U0 490 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 SYMPKQ92797 1274 aaKnown RBP18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 CTAGE1Q96RT6 745 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 CPVLQ9H3G5 476 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 VCPKMTQ9H867 229 aa18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 GPBP1L1Q9HC44 474 aaPredicted RBP18.08■□□□□ 0.48
SQSTM1-213ENST00000510187 SYNRGQ9UMZ2 1314 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 hCG_1642624A0A1W2PR95 340 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 FAM205CA6NFA0 338 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 DPYDQ12882 1025 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 SPP2Q13103 211 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 KIAA1755Q5JYT7 1200 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 FBXO38Q6PIJ6 1188 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 ANKRD13AQ8IZ07 590 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 ZNF280CQ8ND82 737 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 PANX2Q96RD6 677 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 MED15Q96RN5 788 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 NUP88Q99567 741 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 WDR18Q9BV38 432 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 UBA5Q9GZZ9 404 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 SNCAIPQ9Y6H5 919 aa18.07■□□□□ 0.48
SQSTM1-213ENST00000510187 A0A087X0B3 334 aa18.06■□□□□ 0.48
SQSTM1-213ENST00000510187 USP17L10C9JJH3 530 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms