RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 SEPT2Q15019 361 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 ASTE1Q2TB18 679 aaPredicted RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 HSP90B2PQ58FF3 399 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 FAM47AQ5JRC9 791 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 NCAPH2Q6IBW4 605 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 CABP7Q86V35 215 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 GUF1Q8N442 669 aaKnown RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 CNOT6LQ96LI5 555 aaKnown RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 MTMR9Q96QG7 549 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 SH3GL2Q99962 352 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 MMTAG2Q9BU76 263 aaKnown RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 ZNF287Q9HBT7 754 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 RNF14Q9UBS8 474 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 SNX12Q9UMY4 172 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 FAN1Q9Y2M0 1017 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 KIF13BQ9NQT8 1826 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 SSU72P8A0A1W2PR75 194 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 NUTM2BA6NNL0 878 aaPredicted RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 NUTM2EB1AL46 878 aaPredicted RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 FGFR1OPO95684 399 aaKnown RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 PLCG1P19174 1290 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 HSPA2P54652 639 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 LRRC63Q05C16 580 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 PDIA5Q14554 519 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 MCM6Q14566 821 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 EMC10Q5UCC4 262 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 ANKRD40Q6AI12 368 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 C1orf131Q8NDD1 294 aaKnown RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 LRRC27Q9C0I9 530 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 SH2D4AQ9H788 454 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 VPS18Q9P253 973 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 GUCA1BQ9UMX6 200 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 LEMD3Q9Y2U8 911 aa10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 GREB1LQ9C091 1923 aaPredicted RBP10.3□□□□□ -0.76
PDGFRA-208ENST00000509490 A6NNZ2 444 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 RHOXF2BP0C7M4 288 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 GNA11P29992 359 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 NONOQ15233 471 aaKnown RBP eCLIP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 TUBB8Q3ZCM7 444 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 GLE1Q53GS7 698 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 PPP1R18Q6NYC8 613 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 LEKR1Q6ZMV7 388 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 UNC13DQ70J99 1090 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 CCDC84Q86UT8 332 aaPredicted RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 CREG2Q8IUH2 290 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 ZC3H3Q8IXZ2 948 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 PROM2Q8N271 834 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 STAG2Q8N3U4 1231 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 RNF10Q8N5U6 811 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 NEDD1Q8NHV4 660 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 FAM163AQ96GL9 167 aaPredicted RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 RHOXF2Q9BQY4 288 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 ZSWIM4Q9H7M6 989 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 NARFQ9UHQ1 456 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 LRRC37AA6NMS7 1700 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 RCCD1A6NED2 376 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 B4DLN1 442 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 TCP1P17987 556 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 PRDX5P30044 214 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 LMAN1P49257 510 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 MARSP56192 900 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 EVX2Q03828 476 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 TBC1D8BQ0IIM8 1120 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 C16orf86Q6ZW13 317 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 LACRTQ9GZZ8 138 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 NUCKS1Q9H1E3 243 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 TRIM10Q9UDY6 481 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 TSKSQ9UJT2 592 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 FAM184BQ9ULE4 1060 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 ZNF263O14978 683 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 RASA1P20936 1047 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 KIF5AQ12840 1032 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 MAN2A1Q16706 1144 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 VWA3BQ502W6 1294 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 HYIQ5T013 277 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 FKBP15Q5T1M5 1219 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 NEK8Q86SG6 692 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 EIF1ADQ8N9N8 165 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 KIAA0895Q8NCT3 520 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 SECISBP2LQ93073 1101 aaKnown RBP10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 CAVIN3Q969G5 261 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 TMEM47Q9BQJ4 181 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 RIOX1Q9H6W3 641 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 C6orf50Q9HD87 102 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 RIC8AQ9NPQ8 531 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 LY75O60449 1722 aa10.29□□□□□ -0.76
PDGFRA-208ENST00000509490 LTBP1Q14766 1721 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 N4BP1O75113 896 aaKnown RBP10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 IPO7O95373 1038 aaKnown RBP10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 LDHCP07864 332 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 KLRK1P26718 216 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 STK4Q13043 487 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 TXNRD1Q16881 649 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 INF2Q27J81 1249 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 TMEM119Q4V9L6 283 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 GBP6Q6ZN66 633 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 KIAA1328Q86T90 577 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 LINC00116Q8NCU8 138 aa10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 GPKOWQ92917 476 aaPredicted RBP eCLIP10.28□□□□□ -0.76
PDGFRA-208ENST00000509490 SEMA6BQ9H3T3 888 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms