RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZNF444Q8N0Y2 327 aaPredicted RBP18.02■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 RASSF8Q8NHQ8 419 aa18.02■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 SECISBP2LQ93073 1101 aaKnown RBP18.02■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 ZMYND12Q9H0C1 365 aa18.02■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 CPVLQ9H3G5 476 aa18.02■□□□□ 0.48
MSH5-SAPCD1-208ENST00000498473 RASSF10A6NK89 507 aa18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 POTEB2H3BUK9 544 aa18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 PSMA7O14818 248 aa18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 HERVK_113P62684 666 aa18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 GPSM2P81274 684 aa18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TRIM47Q96LD4 638 aa18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TSPYL1Q9H0U9 437 aa18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 LUC7L2Q9Y383 392 aaKnown RBP18.02■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 SNED1Q8TER0 1413 aa18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 PLCG1P19174 1290 aa18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TUBB4BP68371 445 aa18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CABP7Q86V35 215 aa18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MAPKAPK5Q8IW41 473 aa18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 DHTKD1Q96HY7 919 aaPredicted RBP18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TTYH3Q9C0H2 523 aa18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 SAP30BPQ9UHR5 308 aaKnown RBP18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 STX8Q9UNK0 236 aa18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 DDX60LQ5H9U9 1706 aaKnown RBP18.01■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 KLRF2D3W0D1 207 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 H3BQF6 201 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 STIM1Q13586 685 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 LZTS2Q9BRK4 669 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 SPZ1Q9BXG8 430 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 RTFDC1Q9BY42 306 aaPredicted RBP18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MYO6Q9UM54 1294 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 LEMD3Q9Y2U8 911 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 BAG3O95817 575 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 DNM2P50570 870 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 GSTO1P78417 241 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MEA1Q16626 185 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NOC3LQ8WTT2 800 aaKnown RBP18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TRIM9Q9C026 710 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CUEDC2Q9H467 287 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 GUCA1BQ9UMX6 200 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 BCS1LQ9Y276 419 aa18■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CTAGE15A4D2H0 777 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 B4DLN1 442 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 RIMBP2O15034 1052 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 OR52Z1P0C646 297 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CTAGE8P0CG41 777 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CTAGE6Q86UF2 777 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CTAGE4Q8IX94 777 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 AK8Q96MA6 479 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 HAUS4Q9H6D7 363 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MAGEF1Q9HAY2 307 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 ABCB6Q9NP58 842 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 L1RE1Q9UN81 338 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TFR2Q9UP52 801 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 KIF13BQ9NQT8 1826 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 PSMD14O00487 310 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 RHOXF2BP0C7M4 288 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CCNE1P24864 410 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 HOXA10P31260 410 aaPredicted RBP17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 VSNL1P62760 191 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 STK4Q13043 487 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 ANKRD40Q6AI12 368 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NCAPH2Q6IBW4 605 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TRAPPC11Q7Z392 1133 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 KRT25Q7Z3Z0 450 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 AMOTL1Q8IY63 956 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NOA1Q8NC60 698 aaKnown RBP17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 P2RX5Q93086 422 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 C7orf25Q9BPX7 421 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 RHOXF2Q9BQY4 288 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 TUBGCP2Q9BSJ2 902 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MMTAG2Q9BU76 263 aaKnown RBP17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 AGPAT5Q9NUQ2 364 aa17.99■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CDK8P49336 464 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 KLK7P49862 253 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NAPAP54920 295 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 LETM2Q2VYF4 491 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CSGALNACT2Q8N6G5 542 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 EXOC1Q9NV70 894 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MAGEC2Q9UBF1 373 aaPredicted RBP17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 SMCO2A6NFE2 343 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 PES1O00541 588 aaKnown RBP17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CCNT1O60563 726 aaKnown RBP17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 PDE4DQ08499 809 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NONOQ15233 471 aaKnown RBP eCLIP17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 ZNF662Q6ZS27 426 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 C16orf86Q6ZW13 317 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 SUGCTQ9HAC7 445 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 POLLQ9UGP5 575 aa17.98■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NKRFO15226 690 aaKnown RBP eCLIP17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 LDHCP07864 332 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 FCER1AP12319 257 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MIIPQ5JXC2 388 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 USP17L2Q6R6M4 530 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 C15orf52Q6ZUT6 534 aaKnown RBP17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 MSL3Q8N5Y2 521 aaKnown RBP17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 NEDD1Q8NHV4 660 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 EEF2KMTQ96G04 330 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 CRAMP1Q96RY5 1269 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 EYA3Q99504 573 aa17.97■□□□□ 0.47
MSH5-SAPCD1-208ENST00000498473 SYT17Q9BSW7 474 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms