RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 PLCG1P19174 1290 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 ETV3P41162 512 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 CHMP4BP1P59074 171 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 FAM160A1Q05DH4 1040 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 FBLN7Q53RD9 439 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 LCE4AQ5TA78 99 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 SLC6A19Q695T7 634 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 FAM214BQ7L5A3 538 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 MRPL41Q8IXM3 137 aaKnown RBP5.67□□□□□ -1.5
USP54-217ENST00000498213 FAM13CQ8NE31 585 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 TMEM87BQ96K49 555 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 COX4I2Q96KJ9 171 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 TMEM74Q96NL1 305 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 TJP2Q9UDY2 1190 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 ADAM30Q9UKF2 790 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 AKAP12Q02952 1782 aa5.67□□□□□ -1.5
USP54-217ENST00000498213 QSER1Q2KHR3 1735 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 F13A1P00488 732 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 RNASE1P07998 156 aaKnown RBP5.66□□□□□ -1.5
USP54-217ENST00000498213 YARSP54577 528 aaKnown RBP5.66□□□□□ -1.5
USP54-217ENST00000498213 ZP2Q05996 745 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 NKPD1Q17RQ9 610 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 DALRD3Q5D0E6 543 aaKnown RBP5.66□□□□□ -1.5
USP54-217ENST00000498213 KSR1Q8IVT5 923 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 GOLM1Q8NBJ4 401 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 GATAD2BQ8WXI9 593 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 RSRP1Q9BUV0 290 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 MBNL3Q9NUK0 354 aaKnown RBP5.66□□□□□ -1.5
USP54-217ENST00000498213 ABT1Q9ULW3 272 aaKnown RBP5.66□□□□□ -1.5
USP54-217ENST00000498213 ACEP12821 1306 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 PASKQ96RG2 1323 aa5.66□□□□□ -1.5
USP54-217ENST00000498213 KAT6BQ8WYB5 2073 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 RASSF10A6NK89 507 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 H3BS24 57 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 CILPO75339 1184 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 KCNA3P22001 575 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 KIR3DL1P43629 444 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 TNNI2P48788 182 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 SLC23A3Q6PIS1 610 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 HS2ST1Q7LGA3 356 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 CDH24Q86UP0 819 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 MCATQ8IVS2 390 aaKnown RBP5.65□□□□□ -1.5
USP54-217ENST00000498213 HOMEZQ8IX15 550 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 TMEM40Q8WWA1 233 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 HSPA12BQ96MM6 686 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 GPR101Q96P66 508 aaPredicted RBP5.65□□□□□ -1.5
USP54-217ENST00000498213 KBTBD4Q9NVX7 518 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 KLHL3Q9UH77 587 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 ADAMTS6Q9UKP5 1117 aa5.65□□□□□ -1.5
USP54-217ENST00000498213 TNRC6CQ9HCJ0 1690 aaKnown RBP5.65□□□□□ -1.51
USP54-217ENST00000498213 PPIP5K1Q6PFW1 1433 aa5.65□□□□□ -1.51
USP54-217ENST00000498213 TRPM1Q7Z4N2 1603 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 PRR33A8MZF0 331 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 ZNF865P0CJ78 1059 aaPredicted RBP5.64□□□□□ -1.51
USP54-217ENST00000498213 IL2RBP14784 551 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 CYP4F22Q6NT55 531 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 SPOCD1Q6ZMY3 1216 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 C22orf34Q6ZV56 151 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 LRRN4CLQ8ND94 238 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 RIN3Q8TB24 985 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 ACSF2Q96CM8 615 aaPredicted RBP5.64□□□□□ -1.51
USP54-217ENST00000498213 RHOVQ96L33 236 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 CAPNS2Q96L46 248 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 SLC38A3Q99624 504 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 GGT7Q9UJ14 662 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 CORINQ9Y5Q5 1042 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 CAPN6Q9Y6Q1 641 aa5.64□□□□□ -1.51
USP54-217ENST00000498213 CHRNA5P30532 468 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 MPP2Q14168 576 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 CWF19L2Q2TBE0 894 aaKnown RBP5.63□□□□□ -1.51
USP54-217ENST00000498213 CYB5D2Q8WUJ1 264 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 CARS2Q9HA77 564 aaKnown RBP5.63□□□□□ -1.51
USP54-217ENST00000498213 ATP13A1Q9HD20 1204 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 PRDM7Q9NQW5 492 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 SUPT16HQ9Y5B9 1047 aaKnown RBP5.63□□□□□ -1.51
USP54-217ENST00000498213 CCDC7Q96M83 1385 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 PIK3C2GO75747 1445 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 SPATA31E1Q6ZUB1 1445 aa5.63□□□□□ -1.51
USP54-217ENST00000498213 PKD1L3Q7Z443 1732 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 KIF1BO60333 1816 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 FAM221AA4D161 298 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 TLR3O15455 904 aaKnown RBP5.62□□□□□ -1.51
USP54-217ENST00000498213 THAP5Q7Z6K1 395 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 PHACTR4Q8IZ21 702 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 UBE2FQ969M7 185 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 C14orf93Q9H972 538 aaKnown RBP5.62□□□□□ -1.51
USP54-217ENST00000498213 ZSWIM5Q9P217 1185 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 REV1Q9UBZ9 1251 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 KCNH3Q9ULD8 1083 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 USP47Q96K76 1375 aa5.62□□□□□ -1.51
USP54-217ENST00000498213 N4BP2Q86UW6 1770 aaPredicted RBP5.62□□□□□ -1.51
USP54-217ENST00000498213 UPK3BL1B0FP48 263 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 UPK3BL2E5RIL1 263 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 DDNO94850 711 aaPredicted RBP5.61□□□□□ -1.51
USP54-217ENST00000498213 HTR3BO95264 441 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 NSD2O96028 1365 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 EIF4A3P38919 411 aaKnown RBP5.61□□□□□ -1.51
USP54-217ENST00000498213 COL18A1P39060 1754 aa5.61□□□□□ -1.51
USP54-217ENST00000498213 MFAP1P55081 439 aaKnown RBP5.61□□□□□ -1.51
USP54-217ENST00000498213 TMEM201Q5SNT2 666 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms