RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, human

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-233	ENST00000496030	RBM28	Q9NW13	759 aa	Known RBP	13.8	□□□□□ -0.2
APTX-233	ENST00000496030	CCPG1	Q9ULG6	757 aa		13.8	□□□□□ -0.2
APTX-233	ENST00000496030	PNMA6F	A0A0J9YX94	578 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	hCG_1642624	A0A1W2PR95	340 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	SLC15A5	A6NIM6	579 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	STRN	O43815	780 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	DHX16	O60231	1041 aa	Known RBP	13.79	□□□□□ -0.2
APTX-233	ENST00000496030	PFKFB2	O60825	505 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	COBL	O75128	1261 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	IGHA2	P01877	340 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	ALAS1	P13196	640 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	COPB2	P35606	906 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	SLC4A3	P48751	1232 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	CCT2	P78371	535 aa	Known RBP	13.79	□□□□□ -0.2
APTX-233	ENST00000496030	RABEP1	Q15276	862 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	ANKRD1	Q15327	319 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	ME3	Q16798	604 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	TKFC	Q3LXA3	575 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	ABRA	Q8N0Z2	381 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	CCDC82	Q8N4S0	544 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	CHST13	Q8NET6	341 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	TRIB2	Q92519	343 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	TRERF1	Q96PN7	1200 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	RNF146	Q9NTX7	359 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.79	□□□□□ -0.2
APTX-233	ENST00000496030	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.79	□□□□□ -0.2
APTX-233	ENST00000496030	CNTNAP5	Q8WYK1	1306 aa		13.79	□□□□□ -0.2
APTX-233	ENST00000496030	DNAJC25-GNG10	A0A024R161	153 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	OPLAH	O14841	1288 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	CD2BP2	O95400	341 aa	Known RBP	13.78	□□□□□ -0.2
APTX-233	ENST00000496030	MAP2K5	Q13163	448 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	ZNF697	Q5TEC3	545 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	WDR78	Q5VTH9	848 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	FBXO11	Q86XK2	927 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	HOMER1	Q86YM7	354 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	CCAR1	Q8IX12	1150 aa	Known RBP	13.78	□□□□□ -0.2
APTX-233	ENST00000496030	PIBF1	Q8WXW3	757 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	TBC1D5	Q92609	795 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	HOMER2	Q9NSB8	354 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	PNMA2	Q9UL42	364 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030		V9GY48	417 aa	Predicted RBP	13.78	□□□□□ -0.2
APTX-233	ENST00000496030	FRMPD3	Q5JV73	1810 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	ZNF236	Q9UL36	1845 aa		13.78	□□□□□ -0.2
APTX-233	ENST00000496030	CCDC196	A0A1B0GTZ2	297 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	NFIB	O00712	420 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	HOXC6	P09630	235 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	FCER1A	P12319	257 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	IFNAR1	P17181	557 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	ADORA2A	P29274	412 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	ST3GAL1	Q11201	340 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	SCRN1	Q12765	414 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	STK3	Q13188	491 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	LTBP2	Q14767	1821 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	USH1G	Q495M9	461 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	MAP3K21	Q5TCX8	1036 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	NPLOC4	Q8TAT6	608 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	MYLIP	Q8WY64	445 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	RRP36	Q96EU6	259 aa	Known RBP	13.77	□□□□□ -0.21
APTX-233	ENST00000496030	FGD4	Q96M96	766 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	NUDT12	Q9BQG2	462 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	AMN	Q9BXJ7	453 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	ACAD9	Q9H845	621 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	A1CF	Q9NQ94	594 aa	Known RBP	13.77	□□□□□ -0.21
APTX-233	ENST00000496030	FBXO40	Q9UH90	709 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	PCDHA1	Q9Y5I3	950 aa		13.77	□□□□□ -0.21
APTX-233	ENST00000496030	CTDNEP1	O95476	244 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	PGK2	P07205	417 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	XRCC5	P13010	732 aa	Known RBP	13.76	□□□□□ -0.21
APTX-233	ENST00000496030	PRKAR2A	P13861	404 aa	Known RBP	13.76	□□□□□ -0.21
APTX-233	ENST00000496030	CYP2B6	P20813	491 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	PKN1	Q16512	942 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	ZNF792	Q3KQV3	632 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	NOL8	Q76FK4	1167 aa	Known RBP	13.76	□□□□□ -0.21
APTX-233	ENST00000496030	NECAB1	Q8N987	351 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	RGS22	Q8NE09	1264 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	SOCS4	Q8WXH5	440 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	MMP19	Q99542	508 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	FLRT1	Q9NZU1	646 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	LIMCH1	Q9UPQ0	1083 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	IVNS1ABP	Q9Y6Y0	642 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	LCT	P09848	1927 aa		13.76	□□□□□ -0.21
APTX-233	ENST00000496030	ASTN1	O14525	1302 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	ABCB11	O95342	1321 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	PRPF3	O43395	683 aa	Known RBP	13.75	□□□□□ -0.21
APTX-233	ENST00000496030	DTNB	O60941	627 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	PPFIA3	O75145	1194 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	RGS2	P41220	211 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	CNTN2	Q02246	1040 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	GHRHR	Q02643	423 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	KCTD2	Q14681	263 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	CCL14	Q16627	93 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	TYW1B	Q6NUM6	668 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	FAM133A	Q8N9E0	248 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	IL27	Q8NEV9	243 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	PHKB	Q93100	1093 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	GTF3C6	Q969F1	213 aa		13.75	□□□□□ -0.21
APTX-233	ENST00000496030	PURB	Q96QR8	312 aa	Known RBP	13.75	□□□□□ -0.21
APTX-233	ENST00000496030	SLK	Q9H2G2	1235 aa	Predicted RBP	13.75	□□□□□ -0.21
APTX-233	ENST00000496030	TTYH1	Q9H313	450 aa	Predicted RBP	13.75	□□□□□ -0.21
APTX-233	ENST00000496030	SEMA6B	Q9H3T3	888 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms