RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PPP1R13LQ8WUF5 828 aa14.91□□□□□ -0.02
SKA1-205ENST00000494518 PPM1EQ8WY54 764 aa14.91□□□□□ -0.02
SKA1-205ENST00000494518 PBX4Q9BYU1 374 aa14.91□□□□□ -0.02
SKA1-205ENST00000494518 HIPK3Q9H422 1215 aa14.91□□□□□ -0.02
SKA1-205ENST00000494518 HELLSQ9NRZ9 838 aa14.91□□□□□ -0.02
SKA1-205ENST00000494518 TRIP12Q14669 1992 aaPredicted RBP14.91□□□□□ -0.02
SKA1-205ENST00000494518 CHD7Q9P2D1 2997 aa14.91□□□□□ -0.02
SKA1-205ENST00000494518 NCOR1O75376 2440 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 TRIM6-TRIM34B2RNG4 842 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 TOP1P11387 765 aaKnown RBP14.9□□□□□ -0.02
SKA1-205ENST00000494518 CALML3P27482 149 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 NKX3-2P78367 333 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 ALX1Q15699 326 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 MCMDC2Q4G0Z9 681 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 PSRC1Q6PGN9 363 aaPredicted RBP14.9□□□□□ -0.02
SKA1-205ENST00000494518 SLC43A3Q8NBI5 491 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 LNPKQ9C0E8 428 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 PRDM12Q9H4Q4 367 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 VTA1Q9NP79 307 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 IL23AQ9NPF7 189 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 PRDM6Q9NQX0 595 aa14.9□□□□□ -0.02
SKA1-205ENST00000494518 CXXC1Q9P0U4 656 aaPredicted RBP14.9□□□□□ -0.02
SKA1-205ENST00000494518 SCN10AQ9Y5Y9 1956 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 ZEB2O60315 1214 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 B4GALT4O60513 344 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 FGRP09769 529 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 HSPD1P10809 573 aaKnown RBP14.89□□□□□ -0.03
SKA1-205ENST00000494518 NOVP48745 357 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 ALDH5A1P51649 535 aaPredicted RBP14.89□□□□□ -0.03
SKA1-205ENST00000494518 RASIP1Q5U651 963 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 IQSEC1Q6DN90 963 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 B4GALNT3Q6L9W6 998 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 OTOP2Q7RTS6 562 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 TBC1D10CQ8IV04 446 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 PIP4P2Q8N4L2 257 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 RILPL2Q969X0 211 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 SCLYQ96I15 445 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 CPVLQ9H3G5 476 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 TET1Q8NFU7 2136 aa14.89□□□□□ -0.03
SKA1-205ENST00000494518 CABYRO75952 493 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 MYL3P08590 195 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 PDHBP11177 359 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 BTNL9Q6UXG8 535 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 ZKSCAN3Q9BRR0 538 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 NOC4LQ9BVI4 516 aaKnown RBP14.88□□□□□ -0.03
SKA1-205ENST00000494518 WDR11Q9BZH6 1224 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 WNT8AQ9H1J5 351 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 NKX2-4Q9H2Z4 354 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 NEDD4P46934 1319 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 CCDC171Q6TFL3 1326 aa14.88□□□□□ -0.03
SKA1-205ENST00000494518 FGBP02675 491 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 GOLGA8HP0CJ92 632 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 CYP2C9P11712 490 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 USH1GQ495M9 461 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 DUSP28Q4G0W2 176 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 RNF207Q6ZRF8 634 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 OR6J1Q8NGC5 347 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 MORC4Q8TE76 937 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 CLEC4DQ8WXI8 215 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 HERVK_113Q902F9 699 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 TRMT13Q9NUP7 481 aaKnown RBP14.87□□□□□ -0.03
SKA1-205ENST00000494518 ADD3Q9UEY8 706 aaKnown RBP14.87□□□□□ -0.03
SKA1-205ENST00000494518 YBX2Q9Y2T7 364 aaKnown RBP14.87□□□□□ -0.03
SKA1-205ENST00000494518 MYH7BA7E2Y1 1941 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 KIAA1217Q5T5P2 1943 aa14.87□□□□□ -0.03
SKA1-205ENST00000494518 TANC1Q9C0D5 1861 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 MUC3AQ02505 3323 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 RABGGTBP53611 331 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 RPS6P62753 249 aaKnown RBP14.86□□□□□ -0.03
SKA1-205ENST00000494518 ZNF543Q08ER8 600 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 HDAC1Q13547 482 aaPredicted RBP14.86□□□□□ -0.03
SKA1-205ENST00000494518 FAM47CQ5HY64 1035 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 AKNAD1Q5T1N1 836 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 MFSD6Q6ZSS7 791 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 COPS5Q92905 334 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 GAS2L1Q99501 681 aaPredicted RBP14.86□□□□□ -0.03
SKA1-205ENST00000494518 ALDH8A1Q9H2A2 487 aaPredicted RBP14.86□□□□□ -0.03
SKA1-205ENST00000494518 TCP11L1Q9NUJ3 509 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 MSRAQ9UJ68 235 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 Q9Y3F1 56 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 REV3LO60673 3130 aa14.86□□□□□ -0.03
SKA1-205ENST00000494518 TCF20Q9UGU0 1960 aaKnown RBP14.85□□□□□ -0.03
SKA1-205ENST00000494518 ZBBXA8MT70 800 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 MYOGP15173 224 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 IGFBP4P22692 258 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 CHMP4BP1P59074 171 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 PURAQ00577 322 aaKnown RBP14.85□□□□□ -0.03
SKA1-205ENST00000494518 PDE4DQ08499 809 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 ADGRE1Q14246 886 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 CCDC85BQ15834 202 aaPredicted RBP14.85□□□□□ -0.03
SKA1-205ENST00000494518 DEFB128Q7Z7B8 93 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 UBA5Q9GZZ9 404 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 BAZ2BQ9UIF8 2168 aaKnown RBP14.85□□□□□ -0.03
SKA1-205ENST00000494518 ZMYM6O95789 1325 aa14.85□□□□□ -0.03
SKA1-205ENST00000494518 PRRC2BQ5JSZ5 2229 aaKnown RBP14.85□□□□□ -0.03
SKA1-205ENST00000494518 CPT1AP50416 773 aa14.84□□□□□ -0.03
SKA1-205ENST00000494518 PPP2R5BQ15173 497 aa14.84□□□□□ -0.03
SKA1-205ENST00000494518 RAB30Q15771 203 aa14.84□□□□□ -0.03
SKA1-205ENST00000494518 MTIF3Q9H2K0 278 aaKnown RBP14.84□□□□□ -0.03
SKA1-205ENST00000494518 POLR3EQ9NVU0 708 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms