RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZNF576Q9H609 170 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 IL23AQ9NPF7 189 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 IL17RBQ9NRM6 502 aa13.6□□□□□ -0.23
COL6A3-213ENST00000493475 GNEQ9Y223 722 aaKnown RBP13.6□□□□□ -0.23
COL6A3-213ENST00000493475 LAMA2P24043 3122 aaKnown RBP13.6□□□□□ -0.23
COL6A3-213ENST00000493475 NMT2O60551 498 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 KPNA6O60684 536 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 FGAP02671 866 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 FGBP02675 491 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 PFKMP08237 780 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 FGRP09769 529 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 C7P10643 843 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 BEX3Q00994 111 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 PDE4DQ08499 809 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 DUSP28Q4G0W2 176 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 BTNL9Q6UXG8 535 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 RNF207Q6ZRF8 634 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 EEPD1Q7L9B9 569 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 FBXO16Q8IX29 292 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-213ENST00000493475 SLC39A7Q92504 469 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 KATNBL1Q9H079 304 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 TTYH1Q9H313 450 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-213ENST00000493475 CCDC171Q6TFL3 1326 aa13.59□□□□□ -0.23
COL6A3-213ENST00000493475 ZNF213O14771 459 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 ADCY6O43306 1168 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 HSPD1P10809 573 aaKnown RBP13.58□□□□□ -0.24
COL6A3-213ENST00000493475 SMPD1P17405 629 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 CALML3P27482 149 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 NOVP48745 357 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 ALDH5A1P51649 535 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-213ENST00000493475 EPHB4P54760 987 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 BAATQ14032 418 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-213ENST00000493475 PPP2R5BQ15173 497 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 MUM1L1Q5H9M0 696 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 AKNAD1Q5T1N1 836 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 VPS53Q5VIR6 699 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 IL27Q8NEV9 243 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 DNERQ8NFT8 737 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 TMEM47Q9BQJ4 181 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 WDR11Q9BZH6 1224 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 TSPYL2Q9H2G4 693 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-213ENST00000493475 SLC28A3Q9HAS3 691 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 GPCPD1Q9NPB8 672 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 DIAPH3Q9NSV4 1193 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 WDR19Q8NEZ3 1342 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 SALL3Q9BXA9 1300 aa13.58□□□□□ -0.24
COL6A3-213ENST00000493475 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-213ENST00000493475 CD4P01730 458 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 ACTN1P12814 892 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 SLC16A2P36021 539 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 SNAP25P60880 206 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 TMEM240Q5SV17 173 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 ZNF365Q70YC5 407 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 SLC43A3Q8NBI5 491 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 MORC4Q8TE76 937 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 SCFD2Q8WU76 684 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 HERVK_113Q902F9 699 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 CRBNQ96SW2 442 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 COL25A1Q9BXS0 654 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-213ENST00000493475 KAT14Q9H8E8 782 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 CTNNA3Q9UI47 895 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 NOD1Q9Y239 953 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 FRMPD2Q68DX3 1309 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-213ENST00000493475 UNC80Q8N2C7 3258 aa13.57□□□□□ -0.24
COL6A3-213ENST00000493475 A0A0D9SFI3 127 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 PDHBP11177 359 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 CYP2C18P33260 490 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 ZNF543Q08ER8 600 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 TTLL4Q14679 1199 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 TAPT1Q6NXT6 567 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 DGKHQ86XP1 1220 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 MCF2L2Q86YR7 1114 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 CCDC155Q8N6L0 562 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 RETREG2Q8NC44 543 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 OR6J1Q8NGC5 347 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 FAM227BQ96M60 508 aa13.56□□□□□ -0.24
COL6A3-213ENST00000493475 MTG1Q9BT17 334 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-213ENST00000493475 ZBBXA8MT70 800 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 CTAGE5O15320 804 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 DHX16O60231 1041 aaKnown RBP13.55□□□□□ -0.24
COL6A3-213ENST00000493475 MYL3P08590 195 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 ACRP10323 421 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 RFC2P35250 354 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 HAND2P61296 217 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 TRAF1Q13077 416 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 NMIQ13287 307 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-213ENST00000493475 GRIN2CQ14957 1233 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 IMMTQ16891 758 aaKnown RBP13.55□□□□□ -0.24
COL6A3-213ENST00000493475 FAM47CQ5HY64 1035 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 LCE2DQ5TA82 110 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-213ENST00000493475 RGS22Q8NE09 1264 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 PBX4Q9BYU1 374 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 LNPKQ9C0E8 428 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 ALDH8A1Q9H2A2 487 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-213ENST00000493475 CNNM2Q9H8M5 875 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 INCENPQ9NQS7 918 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 PDGFCQ9NRA1 345 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 SLC4A7Q9Y6M7 1214 aa13.55□□□□□ -0.24
COL6A3-213ENST00000493475 NFIBO00712 420 aa13.54□□□□□ -0.24
COL6A3-213ENST00000493475 FOXP2O15409 715 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms