RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 TRERF1Q96PN7 1200 aa15.56■□□□□ 0.08
HDAC3-213ENST00000492506 TRMT13Q9NUP7 481 aaKnown RBP15.56■□□□□ 0.08
HDAC3-213ENST00000492506 CYP39A1Q9NYL5 469 aa15.56■□□□□ 0.08
HDAC3-213ENST00000492506 COG6Q9Y2V7 657 aa15.56■□□□□ 0.08
HDAC3-213ENST00000492506 COL4A4P53420 1690 aaPredicted RBP15.56■□□□□ 0.08
HDAC3-213ENST00000492506 ZBBXA8MT70 800 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 GPAA1O43292 621 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 SMARCA5O60264 1052 aaPredicted RBP15.55■□□□□ 0.08
HDAC3-213ENST00000492506 ZEB2O60315 1214 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 PLA2G6O60733 806 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 ARHGEF15O94989 841 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 CA3P07451 260 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 AAK1Q2M2I8 961 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 KRT40Q6A162 431 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 FAM160B2Q86V87 743 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 PURBQ96QR8 312 aaKnown RBP15.55■□□□□ 0.08
HDAC3-213ENST00000492506 EPHX3Q9H6B9 360 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 DDX19BQ9UMR2 479 aa15.55■□□□□ 0.08
HDAC3-213ENST00000492506 M0R2C6 588 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 RNF113AO15541 343 aaKnown RBP15.54■□□□□ 0.08
HDAC3-213ENST00000492506 PFKMP08237 780 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 CYP2C9P11712 490 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 ALAS1P13196 640 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 TMEM67Q5HYA8 995 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 IFNL3Q8IZI9 196 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 CHURC1Q8WUH1 139 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 LRFN3Q9BTN0 628 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 LRRCC1Q9C099 1032 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 CERS4Q9HA82 394 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 ZNF287Q9HBT7 754 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 VTA1Q9NP79 307 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 ECHDC1Q9NTX5 307 aa15.54■□□□□ 0.08
HDAC3-213ENST00000492506 ARIH1Q9Y4X5 557 aaPredicted RBP15.54■□□□□ 0.08
HDAC3-213ENST00000492506 TNKSO95271 1327 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 TLL1O43897 1013 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 GNAT2P19087 354 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 MCCP23508 829 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 TDO2P48775 406 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 SNAP25P60880 206 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 PURAQ00577 322 aaKnown RBP15.53■□□□□ 0.08
HDAC3-213ENST00000492506 TFAP4Q01664 338 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 DUSP28Q4G0W2 176 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 KIAA1211Q6ZU35 1233 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 RASGRP2Q7LDG7 609 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 DEFB128Q7Z7B8 93 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 CHMP4CQ96CF2 233 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 PRR12Q9ULL5 1215 aa15.53■□□□□ 0.08
HDAC3-213ENST00000492506 RBM47A0AV96 593 aaKnown RBP15.52■□□□□ 0.08
HDAC3-213ENST00000492506 PATL2C9JE40 543 aaKnown RBP15.52■□□□□ 0.08
HDAC3-213ENST00000492506 SUPT20HL2P0C7V6 817 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 TSPY3P0CV98 308 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 TSPY8P0CW00 308 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 CLCN1P35523 988 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 SLC1A4P43007 532 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 TAP1Q03518 808 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 SKIV2LQ15477 1246 aaKnown RBP15.52■□□□□ 0.08
HDAC3-213ENST00000492506 KCTD1Q719H9 257 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 COG5Q9UP83 839 aa15.52■□□□□ 0.08
HDAC3-213ENST00000492506 GTPBP6O43824 516 aaPredicted RBP15.51■□□□□ 0.07
HDAC3-213ENST00000492506 TPM2P07951 284 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 RCSD1Q6JBY9 416 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 SPRED2Q7Z698 418 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 PHOSPHO2Q8TCD6 241 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 KHSRPQ92945 711 aaKnown RBP eCLIP15.51■□□□□ 0.07
HDAC3-213ENST00000492506 SLC9A7Q96T83 725 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 C11orf16Q9NQ32 467 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 IL17RBQ9NRM6 502 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 POLR3EQ9NVU0 708 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 MUC6Q6W4X9 2439 aa15.51■□□□□ 0.07
HDAC3-213ENST00000492506 PIEZO1Q92508 2521 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 LPXNO60711 386 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 APPP05067 770 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 ZFYP08048 801 aaPredicted RBP15.5■□□□□ 0.07
HDAC3-213ENST00000492506 IQCF3P0C7M6 154 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 RFC2P35250 354 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 PDE4BQ07343 736 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 IKQ13123 557 aaPredicted RBP15.5■□□□□ 0.07
HDAC3-213ENST00000492506 TSHZ3Q63HK5 1081 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 NSMFQ6X4W1 530 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 HERC6Q8IVU3 1022 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 PPP1R13LQ8WUF5 828 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 ARNTL2Q8WYA1 636 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 SEC62Q99442 399 aaKnown RBP15.5■□□□□ 0.07
HDAC3-213ENST00000492506 WDR11Q9BZH6 1224 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 CCPG1Q9ULG6 757 aa15.5■□□□□ 0.07
HDAC3-213ENST00000492506 ISY1Q9ULR0 285 aaKnown RBP15.5■□□□□ 0.07
HDAC3-213ENST00000492506 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.5■□□□□ 0.07
HDAC3-213ENST00000492506 PITPNM1O00562 1244 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 NMT2O60551 498 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 ICAM1P05362 532 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 NOVP48745 357 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 ALDH5A1P51649 535 aaPredicted RBP15.49■□□□□ 0.07
HDAC3-213ENST00000492506 PPARAQ07869 468 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 GRB10Q13322 594 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 BAATQ14032 418 aaPredicted RBP15.49■□□□□ 0.07
HDAC3-213ENST00000492506 NBPF20Q3BBV1 942 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 MTG1Q9BT17 334 aaPredicted RBP15.49■□□□□ 0.07
HDAC3-213ENST00000492506 RANBP17Q9H2T7 1088 aaKnown RBP15.49■□□□□ 0.07
HDAC3-213ENST00000492506 SIP14410 1827 aa15.49■□□□□ 0.07
HDAC3-213ENST00000492506 LOC102724159A0A0B4J2E5 919 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms