RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 FAM49AQ9H0Q0 323 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 LRRC4Q9HBW1 653 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 KCNK3O14649 394 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 BUB1BO60566 1050 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 ATP6V1E1P36543 226 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 INPP1P49441 399 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 NFX1Q12986 1120 aaKnown RBP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 DDX27Q96GQ7 796 aaKnown RBP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 NDUFAB1O14561 156 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 MTMR3Q13615 1198 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 MTERF2Q49AM1 385 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 CDKL2Q92772 493 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 BCAP29Q9UHQ4 241 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 PNMA3Q9UL41 463 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 RIPOR2Q9Y4F9 1068 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF233A6NK53 670 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 BUB1O43683 1085 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 ARHGAP4P98171 946 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 FOXD4Q12950 439 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 SLC39A2Q9NP94 309 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 ZNF148Q9UQR1 794 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 TNKSO95271 1327 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 RLBP1P12271 317 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 ACTN1P12814 892 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 ACBD5Q5T8D3 534 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-212ENST00000491769 INPP5FQ9Y2H2 1132 aa14.34□□□□□ -0.11
COL6A3-212ENST00000491769 RPRD2Q5VT52 1461 aaKnown RBP14.33□□□□□ -0.11
COL6A3-212ENST00000491769 YWHAGP61981 247 aaKnown RBP eCLIP14.33□□□□□ -0.11
COL6A3-212ENST00000491769 PTK2Q05397 1052 aa14.33□□□□□ -0.11
COL6A3-212ENST00000491769 AOC3Q16853 763 aa14.33□□□□□ -0.11
COL6A3-212ENST00000491769 CC2D2BQ6DHV5 1058 aa14.33□□□□□ -0.11
COL6A3-212ENST00000491769 ADALQ6DHV7 355 aa14.33□□□□□ -0.11
COL6A3-212ENST00000491769 LMNTD2Q8IXW0 634 aa14.33□□□□□ -0.11
COL6A3-212ENST00000491769 SIX6OS1Q8N1H7 587 aa14.33□□□□□ -0.11
COL6A3-212ENST00000491769 CEP170P1Q96L14 293 aa14.33□□□□□ -0.11
COL6A3-212ENST00000491769 PRDM5Q9NQX1 630 aaPredicted RBP14.33□□□□□ -0.11
COL6A3-212ENST00000491769 JAK2O60674 1132 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 POLR2FP61218 127 aaKnown RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 ADAM9Q13443 819 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 HP1BP3Q5SSJ5 553 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 SDCCAG3Q96C92 435 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 EDC3Q96F86 508 aaKnown RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 ZBTB40Q9NUA8 1239 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 KRT71Q3SY84 523 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 PNMA8AQ86V59 439 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 SMC5Q8IY18 1101 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 SLC7A5P2Q9GIP4 190 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 SLC16A2P36021 539 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 NXF1Q9UBU9 619 aaKnown RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 GPATCH8Q9UKJ3 1502 aaKnown RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 SOX5P35711 763 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 GNL1P36915 607 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 PDE1CQ14123 709 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-212ENST00000491769 PDZD8Q8NEN9 1154 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 KIAA1024Q9UPX6 916 aa14.33□□□□□ -0.12
COL6A3-212ENST00000491769 KCNJ18B7U540 433 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 KRIT1O00522 736 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 SCG2P13521 617 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 PHKG2P15735 406 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 GUCY2FP51841 1108 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 KCNJ12Q14500 433 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 TTC31Q49AM3 519 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-212ENST00000491769 PHLDB2Q86SQ0 1253 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 RBM46Q8TBY0 533 aaKnown RBP14.32□□□□□ -0.12
COL6A3-212ENST00000491769 SYNDIG1Q9H7V2 258 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 GOLGA8SH3BPF8 625 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 SGK1O00141 431 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 DSCC1Q9BVC3 393 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 VCX3AQ9NNX9 186 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 POLR3AO14802 1390 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-212ENST00000491769 RGS16O15492 202 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-212ENST00000491769 ARHGAP6O43182 974 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 TTC25Q96NG3 672 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 TPCN1Q9ULQ1 816 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 PNMA6EA0A0J9YXQ4 647 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 SEMA3EO15041 775 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 GPC4O75487 556 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 FOSP01100 380 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-212ENST00000491769 MFAP3P55082 362 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 MORC3Q14149 939 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 B4GALNT4Q76KP1 1039 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 ATF2P15336 505 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 MYO1EQ12965 1108 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 DBN1Q16643 649 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 DNAAF3Q8N9W5 541 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 FIS1Q9Y3D6 152 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 KDM2BQ8NHM5 1336 aa14.32□□□□□ -0.12
COL6A3-212ENST00000491769 SMIM24O75264 130 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 PDE1BQ01064 536 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 EFCAB13Q8IY85 973 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.31□□□□□ -0.12
COL6A3-212ENST00000491769 LEMD3Q9Y2U8 911 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 TTLL1O95922 423 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 IL13P35225 146 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 COG7P83436 770 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 THOC5Q13769 683 aaKnown RBP14.31□□□□□ -0.12
COL6A3-212ENST00000491769 COA7Q96BR5 231 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 NT5C1BQ96P26 610 aa14.31□□□□□ -0.12
COL6A3-212ENST00000491769 SRGAP2CP0DJJ0 459 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms