RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-208	ENST00000491292	KRT13	P13646	458 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	GNAT2	P19087	354 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	EEF1G	P26641	437 aa	Known RBP	10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	BLID	Q8IZY5	108 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	CCDC155	Q8N6L0	562 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	YY1AP1	Q9H869	796 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	CAPN11	Q9UMQ6	739 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	PALM	O75781	387 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	CTSW	P56202	376 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	AMPD2	Q01433	879 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	CACNB1	Q02641	598 aa	Predicted RBP	10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	KLHL30	Q0D2K2	578 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	ENAH	Q8N8S7	591 aa	Predicted RBP	10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	MARCH10	Q8NA82	808 aa	Predicted RBP	10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	TBC1D5	Q92609	795 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	PTPRU	Q92729	1446 aa		10.86	□□□□□ -0.67
ERCC3-208	ENST00000491292	TARSL2	A2RTX5	802 aa	Known RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	TMEM110-MUSTN1	A8MSY1	372 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	PPP1R37	O75864	691 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	PDHB	P11177	359 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	CALML3	P27482	149 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	GCK	P35557	465 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	SLC1A4	P43007	532 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	RPS6KA1	Q15418	735 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	SLC9C1	Q4G0N8	1177 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ALS2CL	Q60I27	953 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ANKRD40	Q6AI12	368 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	EMB	Q6PCB8	327 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	DAAM2	Q86T65	1068 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	LSM14B	Q9BX40	385 aa	Known RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ADAMTS1	Q9UHI8	967 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	CD2AP	Q9Y5K6	639 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	PRPF6	O94906	941 aa	Known RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	KIF4A	O95239	1232 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	PLCG1	P19174	1290 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	CASP7	P55210	303 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	CAVIN4	Q5BKX8	364 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ZNF444	Q8N0Y2	327 aa	Predicted RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	CCDC24	Q8N4L8	307 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	PAIP2	Q9BPZ3	127 aa	Known RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ASAP1	Q9ULH1	1129 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	JCAD	Q9P266	1359 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ADAMTS13	Q76LX8	1427 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	AGPS	O00116	658 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ARID4A	P29374	1257 aa	Predicted RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	TTMP	Q5BVD1	217 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	TRMT1L	Q7Z2T5	733 aa	Known RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	TBC1D1	Q86TI0	1168 aa	Predicted RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	ZNF526	Q8TF50	670 aa	Predicted RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	RSRC1	Q96IZ7	334 aa	Known RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	DISC1	Q9NRI5	854 aa		10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	CLTC	Q00610	1675 aa	Known RBP	10.85	□□□□□ -0.67
ERCC3-208	ENST00000491292	PLEKHG1	Q9ULL1	1385 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	PHF20L1	A8MW92	1017 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	FGFR1OP	O95684	399 aa	Known RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	VEGFA	P15692	232 aa	Predicted RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	SLCO1A2	P46721	670 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	CCDC170	Q8IYT3	715 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	THOC1	Q96FV9	657 aa	Known RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	RBM28	Q9NW13	759 aa	Known RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	ATP8A1	Q9Y2Q0	1164 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	RPS6KA5	O75582	802 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	PCCA	P05165	728 aa	Predicted RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	ADCY1	Q08828	1119 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	STK4	Q13043	487 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	TRADD	Q15628	312 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	DCAF17	Q5H9S7	520 aa	Predicted RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	NT5DC1	Q5TFE4	455 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	GKAP1	Q5VSY0	366 aa	Predicted RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	SFMBT2	Q5VUG0	894 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	SV2B	Q7L1I2	683 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	ITIH6	Q6UXX5	1313 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	STK36	Q9NRP7	1315 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	XRN1	Q8IZH2	1706 aa	Known RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	GLI1	P08151	1106 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	AARS	P49588	968 aa	Known RBP eCLIP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	PAPD7	Q5XG87	772 aa	Known RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	TEX2	Q8IWB9	1127 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	NDST4	Q9H3R1	872 aa		10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	SEC63	Q9UGP8	760 aa	Known RBP	10.84	□□□□□ -0.67
ERCC3-208	ENST00000491292	KRIT1	O00522	736 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CTNND1	O60716	968 aa	Known RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CALM1	P0DP23	149 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CALM2	P0DP24	149 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CALM3	P0DP25	149 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	LRCH2	Q5VUJ6	765 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	DZIP1	Q86YF9	867 aa	Known RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	ADSSL1	Q8N142	457 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	ANKS4B	Q8N8V4	417 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	DDX47	Q9H0S4	455 aa	Known RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	SLC40A1	Q9NP59	571 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	KCNK9	Q9NPC2	374 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	BIN2	Q9UBW5	565 aa	Predicted RBP	10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	ANO9	A1A5B4	782 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	CLGN	O14967	610 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	TSPY3	P0CV98	308 aa		10.83	□□□□□ -0.68
ERCC3-208	ENST00000491292	TSPY8	P0CW00	308 aa		10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms