RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 PRRT2Q7Z6L0 340 aaPredicted RBP13.29□□□□□ -0.28
TRIM40-208ENST00000489892 OXER1Q8TDS5 423 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 CCDC102AQ96A19 550 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 COA7Q96BR5 231 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 OTUD5Q96G74 571 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 SLC38A10Q9HBR0 1119 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 CCPG1Q9ULG6 757 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 PCDHA6Q9UN73 950 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 RABGAP1Q9Y3P9 1069 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 PCDHA8Q9Y5H6 950 aa13.29□□□□□ -0.28
TRIM40-208ENST00000489892 A0A1W2PQ27 194 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 A0A1W2PQ64 194 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 A0A1W2PQD8 194 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 SPDYE3A6NKU9 549 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 M0R2N6 131 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 MSNP26038 577 aaKnown RBP13.28□□□□□ -0.28
TRIM40-208ENST00000489892 HOXA7P31268 230 aaPredicted RBP13.28□□□□□ -0.28
TRIM40-208ENST00000489892 COPB2P35606 906 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 ZNF157P51786 506 aaPredicted RBP13.28□□□□□ -0.28
TRIM40-208ENST00000489892 IRX3P78415 501 aaPredicted RBP13.28□□□□□ -0.28
TRIM40-208ENST00000489892 DLK2Q6UY11 383 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 CATSPERGQ6ZRH7 1159 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 NEK8Q86SG6 692 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 FERMT2Q96AC1 680 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 OPTNQ96CV9 577 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 GDPD2Q9HCC8 539 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 PNMA3Q9UL41 463 aa13.28□□□□□ -0.28
TRIM40-208ENST00000489892 GCOM1H8Y6P7 765 aaPredicted RBP13.27□□□□□ -0.29
TRIM40-208ENST00000489892 VWA5AO00534 786 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 IRF6O14896 467 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 ATP2A1O14983 1001 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 PPP1R11O60927 126 aaPredicted RBP13.27□□□□□ -0.29
TRIM40-208ENST00000489892 POLR2MP0CAP2 368 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 ZBTB48P10074 688 aaPredicted RBP13.27□□□□□ -0.29
TRIM40-208ENST00000489892 CETPP11597 493 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 DSG3P32926 999 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 GTF2A2P52657 109 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 CEBPZQ03701 1054 aaKnown RBP13.27□□□□□ -0.29
TRIM40-208ENST00000489892 USH1GQ495M9 461 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 ARL6IP4Q66PJ3 421 aaKnown RBP13.27□□□□□ -0.29
TRIM40-208ENST00000489892 ADALQ6DHV7 355 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 CCDC174Q6PII3 467 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 CCDC73Q6ZRK6 1079 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 KRI1Q8N9T8 703 aaKnown RBP13.27□□□□□ -0.29
TRIM40-208ENST00000489892 SHISA4Q96DD7 197 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 CCDC39Q9UFE4 941 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 FZD1Q9UP38 647 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 AGTPBP1Q9UPW5 1226 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 SLC45A1Q9Y2W3 748 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 LOC285556D6RIA3 1793 aa13.27□□□□□ -0.29
TRIM40-208ENST00000489892 CUTAO60888 179 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 PTPRFP10586 1907 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 OSBPP22059 807 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 CLK2P49760 499 aaKnown RBP13.26□□□□□ -0.29
TRIM40-208ENST00000489892 SAMD1Q6SPF0 538 aaPredicted RBP13.26□□□□□ -0.29
TRIM40-208ENST00000489892 MOXD1Q6UVY6 613 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 LBX2Q6XYB7 198 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 GADL1Q6ZQY3 521 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 ZNF579Q8NAF0 562 aaKnown RBP13.26□□□□□ -0.29
TRIM40-208ENST00000489892 CCDC34Q96HJ3 373 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 CLMNQ96JQ2 1002 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 ZIC5Q96T25 663 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 PYM1Q9BRP8 204 aaKnown RBP13.26□□□□□ -0.29
TRIM40-208ENST00000489892 TEX13BQ9BXU2 312 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 FBXO28Q9NVF7 368 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 SAGE1Q9NXZ1 904 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 ADAMTS5Q9UNA0 930 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 CLIC4Q9Y696 253 aa13.26□□□□□ -0.29
TRIM40-208ENST00000489892 SYCE3A1L190 88 aa13.25□□□□□ -0.29
TRIM40-208ENST00000489892 TOB1P50616 345 aaPredicted RBP13.25□□□□□ -0.29
TRIM40-208ENST00000489892 FXR1P51114 621 aaKnown RBP eCLIP13.25□□□□□ -0.29
TRIM40-208ENST00000489892 USP11P51784 963 aa13.25□□□□□ -0.29
TRIM40-208ENST00000489892 GHRHRQ02643 423 aa13.25□□□□□ -0.29
TRIM40-208ENST00000489892 PTPAQ15257 358 aa13.25□□□□□ -0.29
TRIM40-208ENST00000489892 RBSNQ9H1K0 784 aa13.25□□□□□ -0.29
TRIM40-208ENST00000489892 DDX19AQ9NUU7 478 aaKnown RBP13.25□□□□□ -0.29
TRIM40-208ENST00000489892 BIN2Q9UBW5 565 aaPredicted RBP13.25□□□□□ -0.29
TRIM40-208ENST00000489892 FBXO40Q9UH90 709 aa13.25□□□□□ -0.29
TRIM40-208ENST00000489892 FAM155AB1AL88 458 aaPredicted RBP13.24□□□□□ -0.29
TRIM40-208ENST00000489892 NEMFO60524 1076 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 TRPA1O75762 1119 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 ATP2B1P20020 1258 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 CMA1P23946 247 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 PRPHP41219 470 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 TERF1P54274 439 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 ATP2C1P98194 919 aaPredicted RBP13.24□□□□□ -0.29
TRIM40-208ENST00000489892 INF2Q27J81 1249 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 JAKMIP3Q5VZ66 844 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 PPP4R3AQ6IN85 833 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.24□□□□□ -0.29
TRIM40-208ENST00000489892 RASGRP4Q8TDF6 673 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 TBCKQ8TEA7 893 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 MRPS27Q92552 414 aaKnown RBP13.24□□□□□ -0.29
TRIM40-208ENST00000489892 ATG4CQ96DT6 458 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 WNK4Q96J92 1243 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 RAB34Q9BZG1 259 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 FAM13BQ9NYF5 915 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 PCDHB6Q9Y5E3 794 aa13.24□□□□□ -0.29
TRIM40-208ENST00000489892 PARP14Q460N5 1801 aa13.23□□□□□ -0.29
TRIM40-208ENST00000489892 SPDYE16A6NNV3 312 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms