RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 HOXA7P31268 230 aaPredicted RBP24.63■■□□□ 1.53
SMC4-221ENST00000489573 GJA5P36382 358 aa24.63■■□□□ 1.53
SMC4-221ENST00000489573 OAZ1P54368 228 aa24.63■■□□□ 1.53
SMC4-221ENST00000489573 C4orf32Q8N8J7 132 aa24.63■■□□□ 1.53
SMC4-221ENST00000489573 ZNF579Q8NAF0 562 aaKnown RBP24.63■■□□□ 1.53
SMC4-221ENST00000489573 DDX19AQ9NUU7 478 aaKnown RBP24.63■■□□□ 1.53
SMC4-221ENST00000489573 NR1I2O75469 434 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 ITGBL1O95965 494 aaPredicted RBP24.62■■□□□ 1.53
SMC4-221ENST00000489573 CFBP00751 764 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 ALAS1P13196 640 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 HOXA13P31271 388 aaPredicted RBP24.62■■□□□ 1.53
SMC4-221ENST00000489573 FAM160A1Q05DH4 1040 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 ZSCAN23Q3MJ62 389 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 RESP18Q5W5W9 173 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 ARL6IP4Q66PJ3 421 aaKnown RBP24.62■■□□□ 1.53
SMC4-221ENST00000489573 SHC4Q6S5L8 630 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 FASTKD5Q7L8L6 764 aaKnown RBP24.62■■□□□ 1.53
SMC4-221ENST00000489573 AGTPBP1Q9UPW5 1226 aa24.62■■□□□ 1.53
SMC4-221ENST00000489573 A0A1B0GVL5 298 aa24.61■■□□□ 1.53
SMC4-221ENST00000489573 LAD1O00515 517 aa24.61■■□□□ 1.53
SMC4-221ENST00000489573 SNAPC2Q13487 334 aa24.61■■□□□ 1.53
SMC4-221ENST00000489573 MCF2L2Q86YR7 1114 aa24.61■■□□□ 1.53
SMC4-221ENST00000489573 CLEC4DQ8WXI8 215 aa24.61■■□□□ 1.53
SMC4-221ENST00000489573 P2RX7Q99572 595 aaKnown RBP24.61■■□□□ 1.53
SMC4-221ENST00000489573 NAP1L4Q99733 375 aaKnown RBP24.61■■□□□ 1.53
SMC4-221ENST00000489573 CEP350Q5VT06 3117 aa24.61■■□□□ 1.53
SMC4-221ENST00000489573 NEMFO60524 1076 aa24.6■■□□□ 1.53
SMC4-221ENST00000489573 GRIN1Q05586 938 aa24.6■■□□□ 1.53
SMC4-221ENST00000489573 ENGASEQ8NFI3 743 aa24.6■■□□□ 1.53
SMC4-221ENST00000489573 FAM237AA0A1B0GTK4 181 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 ATP2A1O14983 1001 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 EDIL3O43854 480 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 PFKFB1P16118 471 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 GCFC2P16383 781 aaKnown RBP24.59■■□□□ 1.53
SMC4-221ENST00000489573 MOGSQ13724 837 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 PPP4R3AQ6IN85 833 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 TBC1D5Q92609 795 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 CSRNP2Q9H175 543 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 NUP62CLQ9H1M0 184 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 TMEM60Q9H2L4 133 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 SMCHD1A6NHR9 2005 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 NFIBO00712 420 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 TDP2O95551 362 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 SREBF1P36956 1147 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 PRPHP41219 470 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 HSD17B4P51659 736 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 USP11P51784 963 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 NDUFA8P51970 172 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 IRX3P78415 501 aaPredicted RBP24.59■■□□□ 1.53
SMC4-221ENST00000489573 GHRHRQ02643 423 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 SNW1Q13573 536 aaKnown RBP24.59■■□□□ 1.53
SMC4-221ENST00000489573 FCHSD1Q86WN1 690 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 ZNF214Q9UL59 606 aaPredicted RBP24.59■■□□□ 1.53
SMC4-221ENST00000489573 HPSEQ9Y251 543 aa24.59■■□□□ 1.53
SMC4-221ENST00000489573 VWA3AA6NCI4 1184 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 OR52Z1P0C646 297 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 ARHGAP4P98171 946 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 PABPC4Q13310 644 aaKnown RBP eCLIP24.58■■□□□ 1.528e-9■■■■■ 603.5
SMC4-221ENST00000489573 TMEM132BQ14DG7 1078 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 MUM1L1Q5H9M0 696 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 CST9Q5W186 159 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 SNRNP48Q6IEG0 339 aaKnown RBP24.58■■□□□ 1.52
SMC4-221ENST00000489573 FMR1NBQ8N0W7 255 aaPredicted RBP24.58■■□□□ 1.52
SMC4-221ENST00000489573 SAMD3Q8N6K7 520 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 CRYGNQ8WXF5 182 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 TRERF1Q96PN7 1200 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 TEX13BQ9BXU2 312 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 CLSTN2Q9H4D0 955 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 EHMT1Q9H9B1 1298 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 HOMER2Q9NSB8 354 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 FAM13BQ9NYF5 915 aa24.58■■□□□ 1.52
SMC4-221ENST00000489573 COL11A1P12107 1806 aaPredicted RBP24.57■■□□□ 1.52
SMC4-221ENST00000489573 KINO60870 393 aaKnown RBP24.57■■□□□ 1.52
SMC4-221ENST00000489573 MOXD1Q6UVY6 613 aa24.57■■□□□ 1.52
SMC4-221ENST00000489573 MB21D1Q8N884 522 aa24.57■■□□□ 1.52
SMC4-221ENST00000489573 RNF146Q9NTX7 359 aa24.57■■□□□ 1.52
SMC4-221ENST00000489573 A0A0G2JMZ2 1700 aa24.57■■□□□ 1.52
SMC4-221ENST00000489573 KIF3CO14782 793 aa24.56■■□□□ 1.52
SMC4-221ENST00000489573 LETM1O95202 739 aaPredicted RBP24.56■■□□□ 1.52
SMC4-221ENST00000489573 TKFCQ3LXA3 575 aa24.56■■□□□ 1.52
SMC4-221ENST00000489573 SPECC1Q5M775 1068 aa24.56■■□□□ 1.52
SMC4-221ENST00000489573 POTEDQ86YR6 584 aa24.56■■□□□ 1.52
SMC4-221ENST00000489573 ASCC2Q9H1I8 757 aaPredicted RBP24.56■■□□□ 1.52
SMC4-221ENST00000489573 MAP3K20Q9NYL2 800 aaKnown RBP24.56■■□□□ 1.52
SMC4-221ENST00000489573 MYH7BA7E2Y1 1941 aa24.56■■□□□ 1.52
SMC4-221ENST00000489573 RBBP6Q7Z6E9 1792 aaKnown RBP24.56■■□□□ 1.52
SMC4-221ENST00000489573 SLC37A4O43826 429 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 ZNF445P59923 1031 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 IL17AQ16552 155 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 GPAT2Q6NUI2 795 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 LBX2Q6XYB7 198 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 DTHD1Q6ZMT9 781 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 DDX25Q9UHL0 483 aaKnown RBP24.55■■□□□ 1.52
SMC4-221ENST00000489573 RIPK3Q9Y572 518 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 TRPM7Q96QT4 1865 aa24.55■■□□□ 1.52
SMC4-221ENST00000489573 SYCE3A1L190 88 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 CETPP11597 493 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 OSBPP22059 807 aa24.54■■□□□ 1.52
SMC4-221ENST00000489573 LONP1P36776 959 aaKnown RBP24.54■■□□□ 1.52
SMC4-221ENST00000489573 SYKP43405 635 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms