RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 SLC38A10Q9HBR0 1119 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 C6orf50Q9HD87 102 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 DACT1Q9NYF0 836 aa18.16■□□□□ 0.5
SYNE1-227ENST00000489156 SYCE3A1L190 88 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 ZBED4O75132 1171 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 CMA1P23946 247 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 QRICH1Q2TAL8 776 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 TPRNQ4KMQ1 711 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 AXDND1Q5T1B0 1012 aaPredicted RBP18.15■□□□□ 0.5
SYNE1-227ENST00000489156 PPP1R18Q6NYC8 613 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 LBX2Q6XYB7 198 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 CCDC73Q6ZRK6 1079 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 CPXCR1Q8N123 301 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 MRPS27Q92552 414 aaKnown RBP18.15■□□□□ 0.5
SYNE1-227ENST00000489156 PAGR1Q9BTK6 254 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 CTDP1Q9Y5B0 961 aaPredicted RBP18.15■□□□□ 0.5
SYNE1-227ENST00000489156 THSD7BQ9C0I4 1608 aa18.15■□□□□ 0.5
SYNE1-227ENST00000489156 A0A0G2JMZ2 1700 aa18.14■□□□□ 0.5
SYNE1-227ENST00000489156 FAM160A1Q05DH4 1040 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 L1TD1Q5T7N2 865 aaKnown RBP18.14■□□□□ 0.49
SYNE1-227ENST00000489156 REPS2Q8NFH8 660 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 RAVER2Q9HCJ3 691 aaKnown RBP18.14■□□□□ 0.49
SYNE1-227ENST00000489156 BTBD7Q9P203 1132 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 RBPJLQ9UBG7 517 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 SMCO2A6NFE2 343 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 NR1I2O75469 434 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 FDX1P10109 184 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 TMEM132BQ14DG7 1078 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 EARS2Q5JPH6 523 aaKnown RBP18.14■□□□□ 0.49
SYNE1-227ENST00000489156 DNAJC5GQ8N7S2 189 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 NUP62CLQ9H1M0 184 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 TXNRD2Q9NNW7 524 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 PCDHB6Q9Y5E3 794 aa18.14■□□□□ 0.49
SYNE1-227ENST00000489156 ZNF536O15090 1300 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 CUTAO60888 179 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 PPP1R11O60927 126 aaPredicted RBP18.13■□□□□ 0.49
SYNE1-227ENST00000489156 ALDH1A1P00352 501 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 TAL1P17542 331 aaPredicted RBP18.13■□□□□ 0.49
SYNE1-227ENST00000489156 MARCKSP29966 332 aaPredicted RBP18.13■□□□□ 0.49
SYNE1-227ENST00000489156 CRHR2Q13324 411 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 PLS1Q14651 629 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 PIK3AP1Q6ZUJ8 805 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 GAS2L3Q86XJ1 694 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 KRI1Q8N9T8 703 aaKnown RBP18.13■□□□□ 0.49
SYNE1-227ENST00000489156 ENGASEQ8NFI3 743 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 AGBL1Q96MI9 1066 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 ZFYVE28Q9HCC9 887 aa18.13■□□□□ 0.49
SYNE1-227ENST00000489156 CA12O43570 354 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 CNMDO75829 334 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 MRE11P49959 708 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 SNW1Q13573 536 aaKnown RBP18.12■□□□□ 0.49
SYNE1-227ENST00000489156 USH1GQ495M9 461 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 ANKRD13CQ8N6S4 541 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 MB21D1Q8N884 522 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 FSIP1Q8NA03 581 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 ZNF214Q9UL59 606 aaPredicted RBP18.12■□□□□ 0.49
SYNE1-227ENST00000489156 PCDHA6Q9UN73 950 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 RABGAP1Q9Y3P9 1069 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 PCDHA8Q9Y5H6 950 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 CCDC194A0A1B0GVG4 234 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 TRPA1O75762 1119 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 PTPREP23469 700 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 GCLCP48506 637 aaPredicted RBP18.12■□□□□ 0.49
SYNE1-227ENST00000489156 Q3C1V9 767 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 TTC38Q5R3I4 469 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 KRT25Q7Z3Z0 450 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 FBXO11Q86XK2 927 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 ZNF579Q8NAF0 562 aaKnown RBP18.12■□□□□ 0.49
SYNE1-227ENST00000489156 COA7Q96BR5 231 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 GLT8D2Q9H1C3 349 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 R3HDMLQ9H3Y0 253 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 CLSTN2Q9H4D0 955 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 RNF186Q9NXI6 227 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 CPA4Q9UI42 421 aa18.12■□□□□ 0.49
SYNE1-227ENST00000489156 FAM237AA0A1B0GTK4 181 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 FAM205CA6NFA0 338 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 CTAGE5O15320 804 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 TLR2O60603 784 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 ICAM1P05362 532 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 GTF3C2Q8WUA4 911 aaPredicted RBP18.11■□□□□ 0.49
SYNE1-227ENST00000489156 AMNQ9BXJ7 453 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 TNMDQ9H2S6 317 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 GOLPH3LQ9H4A5 285 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 CCPG1Q9ULG6 757 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 SRPRBQ9Y5M8 271 aaKnown RBP18.11■□□□□ 0.49
SYNE1-227ENST00000489156 ADGRA2Q96PE1 1338 aa18.11■□□□□ 0.49
SYNE1-227ENST00000489156 TBC1D8O95759 1140 aa18.1■□□□□ 0.49
SYNE1-227ENST00000489156 STAT3P40763 770 aa18.1■□□□□ 0.49
SYNE1-227ENST00000489156 SNRNP48Q6IEG0 339 aaKnown RBP18.1■□□□□ 0.49
SYNE1-227ENST00000489156 RBM43Q6ZSC3 357 aaKnown RBP18.1■□□□□ 0.49
SYNE1-227ENST00000489156 FMR1NBQ8N0W7 255 aaPredicted RBP18.1■□□□□ 0.49
SYNE1-227ENST00000489156 SPATC1LQ9H0A9 340 aa18.1■□□□□ 0.49
SYNE1-227ENST00000489156 RIPK3Q9Y572 518 aa18.1■□□□□ 0.49
SYNE1-227ENST00000489156 PCDHA1Q9Y5I3 950 aa18.1■□□□□ 0.49
SYNE1-227ENST00000489156 ATP2A1O14983 1001 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 KINO60870 393 aaKnown RBP18.09■□□□□ 0.49
SYNE1-227ENST00000489156 ATP2B1P20020 1258 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 OAZ1P54368 228 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 ERVK-9P63128 1117 aa18.09■□□□□ 0.49
SYNE1-227ENST00000489156 ERVK-24P63145 666 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms