RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 KCNH3Q9ULD8 1083 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 URB2Q14146 1524 aaKnown RBP5.47□□□□□ -1.53
PTCD3-216ENST00000487043 TOPBP1Q92547 1522 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-216ENST00000487043 H0Y8X5 98 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 SIGLEC6O43699 453 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 PRAMEF1O95521 474 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 MAP4K2Q12851 820 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 STRN3Q13033 797 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 GRB10Q13322 594 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 ZNF460Q14592 562 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 PCBP1Q15365 356 aaKnown RBP eCLIP5.46□□□□□ -1.54
PTCD3-216ENST00000487043 CYP27C1Q4G0S4 372 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 SFRP5Q5T4F7 317 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 OGFOD3Q6PK18 319 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 FAM9AQ8IZU1 332 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-216ENST00000487043 AFAP1L2Q8N4X5 818 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 DTWD2Q8NBA8 298 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 GSTCDQ8NEC7 633 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 SCLYQ96I15 445 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 ASCC2Q9H1I8 757 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-216ENST00000487043 PRDM5Q9NQX1 630 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-216ENST00000487043 CYP26B1Q9NR63 512 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 PRR13Q9NZ81 148 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 TRAF6Q9Y4K3 522 aa5.46□□□□□ -1.54
PTCD3-216ENST00000487043 ERCC6Q03468 1493 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 MRC2Q9UBG0 1479 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 FAM83GA6ND36 823 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 KPNA6O60684 536 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 RASGRP1O95267 797 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 CPP00450 1065 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 ASLP04424 464 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 FAM87AP0C7U9 286 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 CPEP16870 476 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 ITIH2P19823 946 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 EXOSC10Q01780 885 aaKnown RBP5.45□□□□□ -1.54
PTCD3-216ENST00000487043 SCRN1Q12765 414 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 BNIP3Q12983 259 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 ZNF124Q15973 351 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 SPRED2Q7Z698 418 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 MAGEB10Q96LZ2 347 aaPredicted RBP5.45□□□□□ -1.54
PTCD3-216ENST00000487043 Q96M66 194 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 SOGA1O94964 1423 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 EEA1Q15075 1411 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 FGD5Q6ZNL6 1462 aa5.45□□□□□ -1.54
PTCD3-216ENST00000487043 ALG1L2C9J202 215 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 STXBP3O00186 592 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 SCG5P05408 212 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 CD3EP07766 207 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 JMJD7P0C870 316 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 IGFALSP35858 605 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 FLT3P36888 993 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 GUCY2FP51841 1108 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 POU4F1Q01851 419 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 CYP4F3Q08477 520 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 NMIQ13287 307 aaPredicted RBP5.44□□□□□ -1.54
PTCD3-216ENST00000487043 PKN1Q16512 942 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 CLEC16AQ2KHT3 1053 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 CFAP100Q494V2 611 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 SLC35F1Q5T1Q4 408 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 CWF19L1Q69YN2 538 aaKnown RBP5.44□□□□□ -1.54
PTCD3-216ENST00000487043 PKN3Q6P5Z2 889 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 CRTC3Q6UUV7 619 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 KCNT2Q6UVM3 1135 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 ASXL2Q76L83 1435 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 MAMDC2Q7Z304 686 aaPredicted RBP5.44□□□□□ -1.54
PTCD3-216ENST00000487043 FMNL3Q8IVF7 1028 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 MISP3Q96FF7 219 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 C1orf159Q96HA4 380 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 COX4I2Q96KJ9 171 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 MCMBPQ9BTE3 642 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 MTFR1LQ9H019 292 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 RC3H2Q9HBD1 1191 aaKnown RBP5.44□□□□□ -1.54
PTCD3-216ENST00000487043 PCDHA9Q9Y5H5 950 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 POLA1P09884 1462 aaPredicted RBP5.44□□□□□ -1.54
PTCD3-216ENST00000487043 WASHC2CQ9Y4E1 1318 aa5.44□□□□□ -1.54
PTCD3-216ENST00000487043 RUSC2Q8N2Y8 1516 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 SHISA3A0PJX4 238 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 PRR33A8MZF0 331 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 FARP2O94887 1054 aaPredicted RBP5.43□□□□□ -1.54
PTCD3-216ENST00000487043 CRTAMO95727 393 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 APPP05067 770 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 GSNP06396 782 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 PMLP29590 882 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 CTSKP43235 329 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 KIR3DL1P43629 444 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 SEPT7Q16181 437 aaKnown RBP5.43□□□□□ -1.54
PTCD3-216ENST00000487043 HSP90AB2PQ58FF8 381 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 DENND5AQ6IQ26 1287 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 ARHGAP27Q6ZUM4 889 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 UBE2R2Q712K3 238 aaPredicted RBP5.43□□□□□ -1.54
PTCD3-216ENST00000487043 PLD6Q8N2A8 252 aaKnown RBP5.43□□□□□ -1.54
PTCD3-216ENST00000487043 NETO1Q8TDF5 533 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 DCAF4Q8WV16 495 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 FAM168AQ92567 244 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 GPRC5CQ9NQ84 441 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 THRAP3Q9Y2W1 955 aaKnown RBP5.43□□□□□ -1.54
PTCD3-216ENST00000487043 WDR62O43379 1518 aa5.43□□□□□ -1.54
PTCD3-216ENST00000487043 KIF27Q86VH2 1401 aa5.42□□□□□ -1.54
PTCD3-216ENST00000487043 TCRBV16S1A1N1A0A5B0 115 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms