RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ATF2P15336 505 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 VPS41P49754 854 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 LARSQ9P2J5 1176 aaKnown RBP17.99■□□□□ 0.47
COL7A1-210ENST00000487017 RIPOR2Q9Y4F9 1068 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 EFCAB6Q5THR3 1501 aa17.99■□□□□ 0.47
COL7A1-210ENST00000487017 LMTK3Q96Q04 1460 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 CLCN6P51797 869 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 NR5A1Q13285 461 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 PANX2Q96RD6 677 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 PARD6BQ9BYG5 372 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 FAM114A2Q9NRY5 505 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 FAN1Q9Y2M0 1017 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 MIPOL1Q8TD10 442 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 TACO1Q9BSH4 297 aaKnown RBP17.98■□□□□ 0.47
COL7A1-210ENST00000487017 SASH1O94885 1247 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 DLGAP5Q15398 846 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 TMCO4Q5TGY1 634 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 PPM1KQ8N3J5 372 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 UHMK1Q8TAS1 419 aaKnown RBP17.98■□□□□ 0.47
COL7A1-210ENST00000487017 RABGAP1Q9Y3P9 1069 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 SLC8A1P32418 973 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 LIG4P49917 911 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 HADHQ16836 314 aaKnown RBP17.98■□□□□ 0.47
COL7A1-210ENST00000487017 RASGRP4Q8TDF6 673 aa17.98■□□□□ 0.47
COL7A1-210ENST00000487017 CASQ2O14958 399 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-210ENST00000487017 CERKLQ49MI3 558 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-210ENST00000487017 ARMCX5Q6P1M9 558 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 PLA2G4DQ86XP0 818 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 GJA10Q969M2 543 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 TRPC6Q9Y210 931 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 XKR9Q5GH70 373 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 NAA35Q5VZE5 725 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 SARM1Q6SZW1 724 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 ZNF804BA4D1E1 1349 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 HIP1RO75146 1068 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 HEXIM1O94992 359 aaKnown RBP17.97■□□□□ 0.47
COL7A1-210ENST00000487017 NOD1Q9Y239 953 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 RRP15Q9Y3B9 282 aaKnown RBP17.97■□□□□ 0.47
COL7A1-210ENST00000487017 CCDC170Q8IYT3 715 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 STAM2O75886 525 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 FOSP01100 380 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-210ENST00000487017 NR2F2P24468 414 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 MYL7Q01449 175 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 GABPAQ06546 454 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 THAP9Q9H5L6 903 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 EPB41L5Q9HCM4 733 aa17.97■□□□□ 0.47
COL7A1-210ENST00000487017 TESPA1A2RU30 521 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-210ENST00000487017 H0YCG3 227 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 TXNDC9O14530 226 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 ZMYND10O75800 440 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 MUM1Q2TAK8 710 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 CCDC125Q86Z20 511 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 ABCA8O94911 1581 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 ATF7P17544 494 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-210ENST00000487017 ICA1Q05084 483 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 C2orf54Q08AI8 447 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 PCDHA1Q9Y5I3 950 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 SOS2Q07890 1332 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-210ENST00000487017 PRPF3O43395 683 aaKnown RBP17.96■□□□□ 0.47
COL7A1-210ENST00000487017 ASPRV1Q53RT3 343 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 SLFN13Q68D06 897 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 ARHGEF25Q86VW2 580 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 TACC3Q9Y6A5 838 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 PLEKHG1Q9ULL1 1385 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 GIPC1O14908 333 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 GNPTABQ3T906 1256 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 ARHGEF16Q5VV41 709 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 KRT26Q7Z3Y9 468 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 SLAIN2Q9P270 581 aa17.96■□□□□ 0.47
COL7A1-210ENST00000487017 LCORLQ8N3X6 602 aa17.96■□□□□ 0.46
COL7A1-210ENST00000487017 NUF2Q9BZD4 464 aa17.96■□□□□ 0.46
COL7A1-210ENST00000487017 RNF14Q9UBS8 474 aa17.96■□□□□ 0.46
COL7A1-210ENST00000487017 BCAP29Q9UHQ4 241 aa17.96■□□□□ 0.46
COL7A1-210ENST00000487017 SARNPP82979 210 aaKnown RBP17.95■□□□□ 0.46
COL7A1-210ENST00000487017 CYP4A11Q02928 519 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 PAGE5Q96GU1 130 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 ST7Q9NRC1 585 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 PCDHB6Q9Y5E3 794 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 TTC36A6NLP5 189 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 AFPP02771 609 aaKnown RBP17.95■□□□□ 0.46
COL7A1-210ENST00000487017 KRT81Q14533 505 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 PHLDB3Q6NSJ2 640 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 CARD10Q9BWT7 1032 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 STK17AQ9UEE5 414 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 ZBED6P86452 979 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 NHEJ1Q9H9Q4 299 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-210ENST00000487017 PRKAB2O43741 272 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 LIFRP42702 1097 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 DYNLL1P63167 89 aaKnown RBP17.95■□□□□ 0.46
COL7A1-210ENST00000487017 SNCBQ16143 134 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.95■□□□□ 0.46
COL7A1-210ENST00000487017 ZSWIM5Q9P217 1185 aa17.95■□□□□ 0.46
COL7A1-210ENST00000487017 NDUFA10O95299 355 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 PDE6BP35913 854 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 AOC3Q16853 763 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 BRDTQ58F21 947 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 PI16Q6UXB8 463 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 PPP4R1Q8TF05 950 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 EXOC4Q96A65 974 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 ZNF408Q9H9D4 720 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms