RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 MAP3K21Q5TCX8 1036 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 NECAB2Q7Z6G3 386 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 MB21D1Q8N884 522 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 SMARCC2Q8TAQ2 1214 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 DIS3LQ8TF46 1054 aaKnown RBP10.34□□□□□ -0.75
COL12A1-208ENST00000486533 BRF1Q92994 677 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 ATG4CQ96DT6 458 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 ZNF274Q96GC6 653 aaPredicted RBP10.34□□□□□ -0.75
COL12A1-208ENST00000486533 SEC62Q99442 399 aaKnown RBP10.34□□□□□ -0.75
COL12A1-208ENST00000486533 MOV10L1Q9BXT6 1211 aaKnown RBP10.34□□□□□ -0.75
COL12A1-208ENST00000486533 NACAP1Q9BZK3 213 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 SPATC1LQ9H0A9 340 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 EPB41L4AQ9HCS5 686 aaPredicted RBP10.34□□□□□ -0.75
COL12A1-208ENST00000486533 FAM13BQ9NYF5 915 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 NR2E3Q9Y5X4 410 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 LAMA3Q16787 3333 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 SZT2Q5T011 3432 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 ROBO3Q96MS0 1386 aa10.34□□□□□ -0.75
COL12A1-208ENST00000486533 PARP14Q460N5 1801 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 ERCC3P19447 782 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 GRB14Q14449 540 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 MFSD14CQ5VZR4 134 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 NCAPG2Q86XI2 1143 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 FBXL16Q8N461 479 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 ANKLE1Q8NAG6 615 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 LARP6Q9BRS8 491 aaKnown RBP10.33□□□□□ -0.76
COL12A1-208ENST00000486533 ZNF287Q9HBT7 754 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 DACT1Q9NYF0 836 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 MRVI1Q9Y6F6 885 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 WDR19Q8NEZ3 1342 aa10.33□□□□□ -0.76
COL12A1-208ENST00000486533 GREB1LQ9C091 1923 aaPredicted RBP10.33□□□□□ -0.76
COL12A1-208ENST00000486533 PATL2C9JE40 543 aaKnown RBP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 KIF2AO00139 706 aaPredicted RBP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 PRDM1O75626 825 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 COL11A1P12107 1806 aaPredicted RBP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 CNGA1P29973 690 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 CCND3P30281 292 aaPredicted RBP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 SYCP1Q15431 976 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 ANO6Q4KMQ2 910 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 ZMYM1Q5SVZ6 1142 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 SARM1Q6SZW1 724 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 DPP9Q86TI2 863 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 ZNF589Q86UQ0 364 aaPredicted RBP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 FERMT3Q86UX7 667 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 IFNL3Q8IZI9 196 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 ZNF444Q8N0Y2 327 aaPredicted RBP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 KIAA1524Q8TCG1 905 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 TRIM5Q9C035 493 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 NBPF3Q9H094 633 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 RYDENQ9NUL5 291 aaKnown RBP10.32□□□□□ -0.76
COL12A1-208ENST00000486533 ANO10Q9NW15 660 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 FLRT1Q9NZU1 646 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 OGDHLQ9ULD0 1010 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 MYH4Q9Y623 1939 aa10.32□□□□□ -0.76
COL12A1-208ENST00000486533 STRNO43815 780 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 HOXC6P09630 235 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 ADORA2AP29274 412 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 ZNF165P49910 485 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 STK3Q13188 491 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 FAM83BQ5T0W9 1011 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 SHCBP1Q8NEM2 672 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 NPLOC4Q8TAT6 608 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 AGXT2Q9BYV1 514 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 NAPBQ9H115 298 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 MROH8Q9H579 483 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 C11orf49Q9H6J7 331 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 FBXO28Q9NVF7 368 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 PAXBP1Q9Y5B6 917 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 ALPK3Q96L96 1907 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 ZNF236Q9UL36 1845 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 BECN2A8MW95 431 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 SLC3A2P08195 630 aaKnown RBP10.31□□□□□ -0.76
COL12A1-208ENST00000486533 CYP21A2P08686 494 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 LIG1P18858 919 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 CYP2C19P33261 490 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 ZNF75DP51815 510 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 PDE4BQ07343 736 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 TMEM132BQ14DG7 1078 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 IMMTQ16891 758 aaKnown RBP10.31□□□□□ -0.76
COL12A1-208ENST00000486533 CCDC129Q6ZRS4 1044 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 BRAPQ7Z569 592 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 CEP57L1Q8IYX8 460 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 PTCD2Q8WV60 388 aaKnown RBP10.31□□□□□ -0.76
COL12A1-208ENST00000486533 MRFAP1L1Q96HT8 127 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 NUP88Q99567 741 aaPredicted RBP10.31□□□□□ -0.76
COL12A1-208ENST00000486533 TTC12Q9H892 705 aaPredicted RBP10.31□□□□□ -0.76
COL12A1-208ENST00000486533 CBX8Q9HC52 389 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 CLIP2Q9UDT6 1046 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 RCOR1Q9UKL0 485 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 PPP1R9AQ9ULJ8 1098 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 LHX6Q9UPM6 363 aa10.31□□□□□ -0.76
COL12A1-208ENST00000486533 FRMPD3Q5JV73 1810 aa10.3□□□□□ -0.76
COL12A1-208ENST00000486533 PTPDC1A2A3K4 754 aa10.3□□□□□ -0.76
COL12A1-208ENST00000486533 F5H6K3 240 aa10.3□□□□□ -0.76
COL12A1-208ENST00000486533 VWA5AO00534 786 aa10.3□□□□□ -0.76
COL12A1-208ENST00000486533 CDKL5O76039 1030 aa10.3□□□□□ -0.76
COL12A1-208ENST00000486533 SLC25A27O95847 323 aa10.3□□□□□ -0.76
COL12A1-208ENST00000486533 TUBB4AP04350 444 aa10.3□□□□□ -0.76
COL12A1-208ENST00000486533 TSPY3P0CV98 308 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms