RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 SNX32Q86XE0 403 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 ZNF384Q8TF68 577 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 NSUN4Q96CB9 384 aaKnown RBP6.17□□□□□ -1.42
CCDC39-205ENST00000485055 XAGE2Q96GT9 111 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 CCDC34Q96HJ3 373 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 MPP4Q96JB8 637 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 ZBTB40Q9NUA8 1239 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 HERC5Q9UII4 1024 aaKnown RBP6.17□□□□□ -1.42
CCDC39-205ENST00000485055 V9GY48 417 aaPredicted RBP6.17□□□□□ -1.42
CCDC39-205ENST00000485055 A0A1B0GUL7 405 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 CFAP99D6REC4 459 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 F2P00734 622 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 PRR29P0C7W0 189 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 MPSTP25325 297 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 RASGRF1Q13972 1273 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 C17orf99Q6UX52 265 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 LBX2Q6XYB7 198 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 HOMER1Q86YM7 354 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 SNRNP27Q8WVK2 155 aaKnown RBP6.17□□□□□ -1.42
CCDC39-205ENST00000485055 TMOD2Q9NZR1 351 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 CHMP3Q9Y3E7 222 aa6.17□□□□□ -1.42
CCDC39-205ENST00000485055 SNX2O60749 519 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PPFIA3O75145 1194 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 OATP04181 439 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PGRP06401 933 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SNAPC2Q13487 334 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 E2F5Q15329 346 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TAF11Q15544 211 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TSGA10IPQ3SY00 556 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TNNI3KQ59H18 835 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PRPF38BQ5VTL8 546 aaKnown RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 CEP85Q6P2H3 762 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 NDUFAF2Q8N183 169 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TMEM57Q8N5G2 664 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 CELF2-AS1Q8N7Q2 184 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SPATA5Q8NB90 893 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PPHLN1Q8NEY8 458 aaKnown RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 CRELD1Q96HD1 420 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 C12orf42Q96LP6 360 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SERINC2Q96SA4 455 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PTPN18Q99952 460 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SELENOOQ9BVL4 669 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 ASPSCR1Q9BZE9 553 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 RIC8AQ9NPQ8 531 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 MRGBPQ9NV56 204 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TMEM260Q9NX78 707 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 HMG20BQ9P0W2 317 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SIRPGQ9P1W8 387 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 AFG3L2Q9Y4W6 797 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 FPGT-TNNI3KV9GXZ4 949 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SNAP23O00161 211 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 IGF2BP3O00425 579 aaKnown RBP eCLIP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 ZBTB24O43167 697 aaPredicted RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 RPN1P04843 607 aaKnown RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 CASP2P42575 452 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PHKA1P46020 1223 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SARSP49591 514 aaKnown RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 VGLL4Q14135 290 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 GPAT2Q6NUI2 795 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 LVRNQ6Q4G3 990 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 FOXP4Q8IVH2 680 aaPredicted RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TBC1D20Q96BZ9 403 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PRKD2Q9BZL6 878 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 ZNF700Q9H0M5 742 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TDRD3Q9H7E2 651 aaKnown RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 DDX19BQ9UMR2 479 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 ANGEL1Q9UNK9 670 aaKnown RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 NOD1Q9Y239 953 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PTPN22Q9Y2R2 807 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 LAMA4Q16363 1823 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SRGAP3O43295 1099 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TLR2O60603 784 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 INMTO95050 263 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 BCRP11274 1271 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 NAT1P18440 290 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 HOXA7P31268 230 aaPredicted RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TSPAN7P41732 249 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 NT5C2P49902 561 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PLCB3Q01970 1234 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 NUCB1Q02818 461 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TFCP2Q12800 502 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 C16orf86Q6ZW13 317 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 FASTKD5Q7L8L6 764 aaKnown RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 MAATS1Q7Z4T9 603 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 SCYL3Q8IZE3 742 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 TPCN2Q8NHX9 752 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 ZNF296Q8WUU4 475 aaPredicted RBP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 BRI3BPQ8WY22 251 aa6.16□□□□□ -1.42
CCDC39-205ENST00000485055 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.16□□□□□ -1.42
CCDC39-205ENST00000485055 PNMA6EA0A0J9YXQ4 647 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 SFI1A8K8P3 1242 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 DDX11L8A8MPP1 907 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 GLULP15104 373 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 NASPP49321 788 aaPredicted RBP6.15□□□□□ -1.42
CCDC39-205ENST00000485055 ZC3H12AQ5D1E8 599 aaKnown RBP6.15□□□□□ -1.42
CCDC39-205ENST00000485055 MEI1Q5TIA1 1274 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 TATDN1Q6P1N9 297 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 CFAP161Q6P656 301 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 SH3BP5LQ7L8J4 393 aa6.15□□□□□ -1.42
CCDC39-205ENST00000485055 HS2ST1Q7LGA3 356 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms