RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 FIGNQ5HY92 759 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 FAM43BQ6ZT52 329 aaPredicted RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 NLRP10Q86W26 655 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 LRWD1Q9UFC0 647 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 ANAPC4Q9UJX5 808 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 SAMM50Q9Y512 469 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 MINDY4BA8MYZ0 360 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 IRS4O14654 1257 aaPredicted RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 MAP2K2P36507 400 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 PAFAH1B1P43034 410 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 CYP27A1Q02318 531 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 EZH2Q15910 746 aaKnown RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 TTMPQ5BVD1 217 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 CSGALNACT2Q8N6G5 542 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 HDAC7Q8WUI4 952 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 CABS1Q96KC9 395 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 IFIH1Q9BYX4 1025 aaKnown RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 SH2D4AQ9H788 454 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 CAPN7Q9Y6W3 813 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 RGL2O15211 777 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 KCNQ2O43526 872 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 DDAH1O94760 285 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 NLRP5P59047 1200 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 TTI2Q6NXR4 508 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 TMTC3Q6ZXV5 915 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 IQCA1Q86XH1 822 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 RASSF8Q8NHQ8 419 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 DHTKD1Q96HY7 919 aaPredicted RBP14.78□□□□□ -0.04
USP40-214ENST00000483519 OSBPL9Q96SU4 736 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 PLCD4Q9BRC7 762 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 LRP5O75197 1615 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 BICDL2A1A5D9 508 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 MEFVO15553 781 aaPredicted RBP14.78□□□□□ -0.04
USP40-214ENST00000483519 RHOBTB3O94955 611 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 FSBPO95073 299 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 GPTP24298 496 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 BAG6P46379 1132 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 PDCLQ13371 301 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 GLE1Q53GS7 698 aaKnown RBP14.78□□□□□ -0.04
USP40-214ENST00000483519 TTC19Q6DKK2 380 aaPredicted RBP14.78□□□□□ -0.04
USP40-214ENST00000483519 C8orf74Q6P047 294 aa14.78□□□□□ -0.04
USP40-214ENST00000483519 GIMAP8Q8ND71 665 aaPredicted RBP14.78□□□□□ -0.04
USP40-214ENST00000483519 CNTNAP5Q8WYK1 1306 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 PDE8AO60658 829 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 APBA3O96018 575 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 FKBP15Q5T1M5 1219 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 HAUS3Q68CZ6 603 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 CCDC155Q8N6L0 562 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 MIGA1Q8NAN2 632 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 TSEN2Q8NCE0 465 aaKnown RBP14.77□□□□□ -0.04
USP40-214ENST00000483519 PIGBQ92521 554 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 ARL8AQ96BM9 186 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 HINFPQ9BQA5 517 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 CAPN6Q9Y6Q1 641 aa14.77□□□□□ -0.04
USP40-214ENST00000483519 MATR3P43243 847 aaKnown RBP eCLIP14.77□□□□□ -0.052e-6■■■□□ 18.6
USP40-214ENST00000483519 SLC7A5Q01650 507 aa14.77□□□□□ -0.05
USP40-214ENST00000483519 TROAPQ12815 778 aa14.77□□□□□ -0.05
USP40-214ENST00000483519 YTHDF3Q7Z739 585 aaKnown RBP14.77□□□□□ -0.05
USP40-214ENST00000483519 RPAINQ86UA6 219 aa14.77□□□□□ -0.05
USP40-214ENST00000483519 HELBQ8NG08 1087 aaPredicted RBP14.77□□□□□ -0.05
USP40-214ENST00000483519 UPF1Q92900 1129 aaKnown RBP eCLIP14.77□□□□□ -0.053e-6■■■■□ 22.4
USP40-214ENST00000483519 CCDC47Q96A33 483 aaKnown RBP14.77□□□□□ -0.05
USP40-214ENST00000483519 PAGR1Q9BTK6 254 aa14.77□□□□□ -0.05
USP40-214ENST00000483519 RASSF10A6NK89 507 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 MTIF2P46199 727 aaKnown RBP14.76□□□□□ -0.05
USP40-214ENST00000483519 KDM7AQ6ZMT4 941 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 CNOT6LQ96LI5 555 aaKnown RBP14.76□□□□□ -0.05
USP40-214ENST00000483519 ERGIC2Q96RQ1 377 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 CXorf56Q9H5V9 222 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 LRP2BPQ9P2M1 347 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 PCDHA13Q9Y5I0 950 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 DUOX1Q9NRD9 1551 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 PLSCR1O15162 318 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 SCG2P13521 617 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 ATP6V1AP38606 617 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 PPP1R2P41236 205 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 KLK7P49862 253 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 IFT20Q8IY31 132 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 SMCR8Q8TEV9 937 aaPredicted RBP14.76□□□□□ -0.05
USP40-214ENST00000483519 ZIM3Q96PE6 472 aa14.76□□□□□ -0.05
USP40-214ENST00000483519 TACO1Q9BSH4 297 aaKnown RBP14.76□□□□□ -0.05
USP40-214ENST00000483519 NOC4LQ9BVI4 516 aaKnown RBP14.76□□□□□ -0.05
USP40-214ENST00000483519 A1CFQ9NQ94 594 aaKnown RBP14.76□□□□□ -0.05
USP40-214ENST00000483519 TRMT112Q9UI30 125 aaKnown RBP14.76□□□□□ -0.05
USP40-214ENST00000483519 ZNF263O14978 683 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 KLRC4O43908 158 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 CALML3P27482 149 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 HNRNPH3P31942 346 aaKnown RBP14.75□□□□□ -0.05
USP40-214ENST00000483519 DDR1Q08345 913 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 DUSP9Q99956 384 aaKnown RBP14.75□□□□□ -0.05
USP40-214ENST00000483519 EPN3Q9H201 632 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 MOCS3O95396 460 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 PCP11498 1178 aaKnown RBP14.75□□□□□ -0.05
USP40-214ENST00000483519 CCNE1P24864 410 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 FNTAP49354 379 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 CFAP58Q5T655 872 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 NFRKBQ6P4R8 1299 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 DTHD1Q6ZMT9 781 aa14.75□□□□□ -0.05
USP40-214ENST00000483519 ZSCAN29Q8IWY8 852 aaPredicted RBP14.75□□□□□ -0.05
USP40-214ENST00000483519 P2RX5Q93086 422 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms