RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 AMNQ9BXJ7 453 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 TMEM39AQ9NV64 488 aa13.34□□□□□ -0.27
CCM2-213ENST00000480658 GNEQ9Y223 722 aaKnown RBP13.34□□□□□ -0.27
CCM2-213ENST00000480658 ARVCFO00192 962 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 NFIBO00712 420 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 KIF5BP33176 963 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 FPGSQ05932 587 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 TTLL4Q14679 1199 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 RNF20Q5VTR2 975 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 FAM109BQ6ICB4 259 aaPredicted RBP13.33□□□□□ -0.28
CCM2-213ENST00000480658 RASGRP2Q7LDG7 609 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 CATIPQ7Z7H3 387 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 FBXO11Q86XK2 927 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 ADGRF4Q8IZF3 695 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 CHMP4CQ96CF2 233 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 MAP3K14Q99558 947 aa13.33□□□□□ -0.28
CCM2-213ENST00000480658 GPHNQ9NQX3 736 aaPredicted RBP13.33□□□□□ -0.28
CCM2-213ENST00000480658 IFIT3O14879 490 aaKnown RBP13.32□□□□□ -0.28
CCM2-213ENST00000480658 CYP21A2P08686 494 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 SUPT20HL2P0C7V6 817 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 EDNRBP24530 442 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 WTAPQ15007 396 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 USH1GQ495M9 461 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 BMP2KLQ5H9B9 411 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 FBXO16Q8IX29 292 aaPredicted RBP13.32□□□□□ -0.28
CCM2-213ENST00000480658 TMEM199Q8N511 208 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 CLEC4DQ8WXI8 215 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 MAP4K1Q92918 833 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 LENG1Q96BZ8 264 aaPredicted RBP13.32□□□□□ -0.28
CCM2-213ENST00000480658 LZTS2Q9BRK4 669 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 WDR11Q9BZH6 1224 aa13.32□□□□□ -0.28
CCM2-213ENST00000480658 MTIF3Q9H2K0 278 aaKnown RBP13.32□□□□□ -0.28
CCM2-213ENST00000480658 TRIOBPQ9H2D6 2365 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 TMEM265A0A087WTH1 108 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 RBM47A0AV96 593 aaKnown RBP13.31□□□□□ -0.28
CCM2-213ENST00000480658 KLRF2D3W0D1 207 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 ZBTB5O15062 677 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 TIMP1P01033 207 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 GOLGA8HP0CJ92 632 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 SMPD1P17405 629 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 CDK7P50613 346 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 SNAP25P60880 206 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 PPIGQ13427 754 aaKnown RBP eCLIP13.31□□□□□ -0.28
CCM2-213ENST00000480658 SEC23AQ15436 765 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 TAPT1Q6NXT6 567 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 KCNV1Q6PIU1 500 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 SLC30A10Q6XR72 485 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 BADQ92934 168 aa13.31□□□□□ -0.28
CCM2-213ENST00000480658 PALM3A6NDB9 673 aaPredicted RBP13.3□□□□□ -0.28
CCM2-213ENST00000480658 E7EWF7 191 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 DYNC1LI2O43237 492 aaPredicted RBP13.3□□□□□ -0.28
CCM2-213ENST00000480658 ADCY6O43306 1168 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 DDAH1O94760 285 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 CALM1P0DP23 149 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 CALM2P0DP24 149 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 CALM3P0DP25 149 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 MCM5P33992 734 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 GNAQP50148 359 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 IRX6P78412 446 aaPredicted RBP13.3□□□□□ -0.28
CCM2-213ENST00000480658 SMAD3P84022 425 aaKnown RBP13.3□□□□□ -0.28
CCM2-213ENST00000480658 GHRHRQ02643 423 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 FAAP100Q0VG06 881 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 STXBP2Q15833 593 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 QRICH1Q2TAL8 776 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 MFSD5Q6N075 450 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 PSRC1Q6PGN9 363 aaPredicted RBP13.3□□□□□ -0.28
CCM2-213ENST00000480658 TEX2Q8IWB9 1127 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 CTCFLQ8NI51 663 aaPredicted RBP13.3□□□□□ -0.28
CCM2-213ENST00000480658 TMEM87BQ96K49 555 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 RMDN3Q96TC7 470 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 JMJD4Q9H9V9 463 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 TBX21Q9UL17 535 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 ASTN1O14525 1302 aa13.3□□□□□ -0.28
CCM2-213ENST00000480658 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.29□□□□□ -0.28
CCM2-213ENST00000480658 TRIM43BA6NCK2 446 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 STAM2O75886 525 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 SMARCA1P28370 1054 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 PTPN11Q06124 597 aaPredicted RBP13.29□□□□□ -0.28
CCM2-213ENST00000480658 ITGA7Q13683 1181 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 GRM4Q14833 912 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 TMEM67Q5HYA8 995 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 ZNF697Q5TEC3 545 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 ARHGEF16Q5VV41 709 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 EEPD1Q7L9B9 569 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 FAM126BQ8IXS8 530 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 DEFB123Q8N688 67 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 SLC43A3Q8NBI5 491 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 OR6J1Q8NGC5 347 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 TRIM43Q96BQ3 446 aaPredicted RBP13.29□□□□□ -0.28
CCM2-213ENST00000480658 MTG1Q9BT17 334 aaPredicted RBP13.29□□□□□ -0.28
CCM2-213ENST00000480658 UBA5Q9GZZ9 404 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 MAD2L2Q9UI95 211 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 PCDHA1Q9Y5I3 950 aa13.29□□□□□ -0.28
CCM2-213ENST00000480658 RBM8AQ9Y5S9 174 aaKnown RBP13.29□□□□□ -0.28
CCM2-213ENST00000480658 MYADML2A6NDP7 307 aa13.28□□□□□ -0.28
CCM2-213ENST00000480658 CTAGE5O15320 804 aa13.28□□□□□ -0.28
CCM2-213ENST00000480658 EIF3JO75822 258 aaKnown RBP13.28□□□□□ -0.28
CCM2-213ENST00000480658 PFKMP08237 780 aa13.28□□□□□ -0.28
CCM2-213ENST00000480658 NFRKBQ6P4R8 1299 aa13.28□□□□□ -0.28
CCM2-213ENST00000480658 CXCL17Q6UXB2 119 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms