RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 POU3F3P20264 500 aaPredicted RBP11.65□□□□□ -0.54
GPNMB-211ENST00000479625 ADD2P35612 726 aa11.65□□□□□ -0.54
GPNMB-211ENST00000479625 NKX3-2P78367 333 aa11.65□□□□□ -0.54
GPNMB-211ENST00000479625 FSCN1Q16658 493 aaKnown RBP11.65□□□□□ -0.54
GPNMB-211ENST00000479625 TMEM67Q5HYA8 995 aa11.65□□□□□ -0.54
GPNMB-211ENST00000479625 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.65□□□□□ -0.54
GPNMB-211ENST00000479625 DEFB128Q7Z7B8 93 aa11.65□□□□□ -0.54
GPNMB-211ENST00000479625 ATP8A2Q9NTI2 1148 aa11.65□□□□□ -0.54
GPNMB-211ENST00000479625 SCN10AQ9Y5Y9 1956 aa11.65□□□□□ -0.55
GPNMB-211ENST00000479625 C5orf42Q9H799 3197 aa11.65□□□□□ -0.55
GPNMB-211ENST00000479625 ATG2AQ2TAZ0 1938 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 SOWAHBA6NEL2 793 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 F5H6K3 240 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 RBAK-RBAKDNI3L0D1 243 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 ATP2A1O14983 1001 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 GPR37L1O60883 481 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 CYP2C9P11712 490 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 PDE4AP27815 886 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 TAP1Q03518 808 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 KLRC3Q07444 240 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 CEP85Q6P2H3 762 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 AMOTL1Q8IY63 956 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 PRPF38AQ8NAV1 312 aaKnown RBP11.64□□□□□ -0.55
GPNMB-211ENST00000479625 PPP1R13LQ8WUF5 828 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 SLC38A10Q9HBR0 1119 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 PDGFCQ9NRA1 345 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 TRMT13Q9NUP7 481 aaKnown RBP11.64□□□□□ -0.55
GPNMB-211ENST00000479625 COG5Q9UP83 839 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 GNEQ9Y223 722 aaKnown RBP11.64□□□□□ -0.55
GPNMB-211ENST00000479625 TRIOO75962 3097 aa11.64□□□□□ -0.55
GPNMB-211ENST00000479625 DYNC1LI2O43237 492 aaPredicted RBP11.63□□□□□ -0.55
GPNMB-211ENST00000479625 ZBED4O75132 1171 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 RLBP1P12271 317 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 SMPD1P17405 629 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 RASA1P20936 1047 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 GRB10Q13322 594 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 ZKSCAN2Q63HK3 967 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 CTR9Q6PD62 1173 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 EEPD1Q7L9B9 569 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 ITPRIPQ8IWB1 547 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 FBXO16Q8IX29 292 aaPredicted RBP11.63□□□□□ -0.55
GPNMB-211ENST00000479625 RPUSD2Q8IZ73 545 aaKnown RBP11.63□□□□□ -0.55
GPNMB-211ENST00000479625 FAM133AQ8N9E0 248 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 HLA-CQ95604 372 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 LARP6Q9BRS8 491 aaKnown RBP11.63□□□□□ -0.55
GPNMB-211ENST00000479625 ALDH8A1Q9H2A2 487 aaPredicted RBP11.63□□□□□ -0.55
GPNMB-211ENST00000479625 A1CFQ9NQ94 594 aaKnown RBP11.63□□□□□ -0.55
GPNMB-211ENST00000479625 CTDP1Q9Y5B0 961 aaPredicted RBP11.63□□□□□ -0.55
GPNMB-211ENST00000479625 SLC4A4Q9Y6R1 1079 aa11.63□□□□□ -0.55
GPNMB-211ENST00000479625 USP34Q70CQ2 3546 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 NLRC5Q86WI3 1866 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 LPXNO60711 386 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 CABYRO75952 493 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 LSM11P83369 360 aaKnown RBP eCLIP11.62□□□□□ -0.55
GPNMB-211ENST00000479625 ERC1Q8IUD2 1116 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 LRRC47Q8N1G4 583 aaKnown RBP11.62□□□□□ -0.55
GPNMB-211ENST00000479625 CHST13Q8NET6 341 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 RHPN1Q8TCX5 695 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 GDPD5Q8WTR4 605 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 DDX27Q96GQ7 796 aaKnown RBP11.62□□□□□ -0.55
GPNMB-211ENST00000479625 AP5M1Q9H0R1 490 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 PAG1Q9NWQ8 432 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 FBXO40Q9UH90 709 aa11.62□□□□□ -0.55
GPNMB-211ENST00000479625 TNKSO95271 1327 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 LCHNA4D1U4 455 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 PI4K2BG5E9Z4 385 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 PFKMP08237 780 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 TAPT1Q6NXT6 567 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 TMCO2Q7Z6W1 182 aaPredicted RBP11.61□□□□□ -0.55
GPNMB-211ENST00000479625 HERC6Q8IVU3 1022 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.61□□□□□ -0.55
GPNMB-211ENST00000479625 CHMP4CQ96CF2 233 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 PURBQ96QR8 312 aaKnown RBP11.61□□□□□ -0.55
GPNMB-211ENST00000479625 SLC9A7Q96T83 725 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 ACAD9Q9H845 621 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 RNF146Q9NTX7 359 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 NYAP2Q9P242 653 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 CLIP2Q9UDT6 1046 aa11.61□□□□□ -0.55
GPNMB-211ENST00000479625 ZNF536O15090 1300 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 IGKV6D-41A0A0C4DH26 115 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 MRE11P49959 708 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 OAZ1P54368 228 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 RASGRP2Q7LDG7 609 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 FTSJ3Q8IY81 847 aaKnown RBP11.6□□□□□ -0.55
GPNMB-211ENST00000479625 OXER1Q8TDS5 423 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 RNF166Q96A37 237 aaPredicted RBP11.6□□□□□ -0.55
GPNMB-211ENST00000479625 DDRGK1Q96HY6 314 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 PUS7LQ9H0K6 701 aaKnown RBP11.6□□□□□ -0.55
GPNMB-211ENST00000479625 BOLA2Q9H3K6 86 aa11.6□□□□□ -0.55
GPNMB-211ENST00000479625 ARPP21Q9UBL0 812 aaPredicted RBP11.6□□□□□ -0.55
GPNMB-211ENST00000479625 ISY1Q9ULR0 285 aaKnown RBP11.6□□□□□ -0.55
GPNMB-211ENST00000479625 ZEB2O60315 1214 aa11.59□□□□□ -0.55
GPNMB-211ENST00000479625 PRDM1O75626 825 aa11.59□□□□□ -0.55
GPNMB-211ENST00000479625 ACTN1P12814 892 aa11.59□□□□□ -0.55
GPNMB-211ENST00000479625 SNAP25P60880 206 aa11.59□□□□□ -0.55
GPNMB-211ENST00000479625 MUM1L1Q5H9M0 696 aa11.59□□□□□ -0.55
GPNMB-211ENST00000479625 FAM47CQ5HY64 1035 aa11.59□□□□□ -0.55
GPNMB-211ENST00000479625 CEP95Q96GE4 821 aa11.59□□□□□ -0.55
GPNMB-211ENST00000479625 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.59□□□□□ -0.55
GPNMB-211ENST00000479625 FEM1BQ9UK73 627 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms