RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 CREB3O43889 395 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 TTLL7Q6ZT98 887 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 TMTC3Q6ZXV5 915 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 SCYL3Q8IZE3 742 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 ZNF654Q8IZM8 581 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 RIOK1Q9BRS2 568 aaKnown RBP9.63□□□□□ -0.87
SYNE1-224ENST00000478916 SATB2Q9UPW6 733 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 KCNK3O14649 394 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 DDAH1O94760 285 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 ADCY8P40145 1251 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 BCAMP50895 628 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 ABCB5Q2M3G0 1257 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 SUPT20HL1Q3ZLR7 823 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 FAM160B1Q5W0V3 765 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 OTUD7AQ8TE49 926 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-224ENST00000478916 WDR17Q8IZU2 1322 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 GCC2Q8IWJ2 1684 aa9.63□□□□□ -0.87
SYNE1-224ENST00000478916 IL1RL1Q01638 556 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 KCTD2Q14681 263 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 IFNL3Q8IZI9 196 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 TRIM56Q9BRZ2 755 aaKnown RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 INTS9Q9NV88 658 aaKnown RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 AATKQ6ZMQ8 1374 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 PCYT1AP49585 367 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 BIRC2Q13490 618 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 FBXO11Q86XK2 927 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 BBOF1Q8ND07 529 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 USP6NLQ92738 828 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 ADPGKQ9BRR6 497 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 CD19P15391 556 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 GARSP41250 739 aaKnown RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 FAM102BQ5T8I3 360 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 NUDCD3Q8IVD9 361 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 PPWD1Q96BP3 646 aaKnown RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 RUNDC3BQ96NL0 473 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 ANLNQ9NQW6 1124 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 TXLNGQ9NUQ3 528 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 SERPINB2P05120 415 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 PDE6AP16499 860 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 TCP1P17987 556 aaKnown RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 TMOD1P28289 359 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 YARSP54577 528 aaKnown RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 SPZ1Q9BXG8 430 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 PLEKHA4Q9H4M7 779 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 PCDHB13Q9Y5F0 798 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 NDUFB9Q9Y6M9 179 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 BBOX1O75936 387 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 ZFXP17010 805 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 RRAGAQ7L523 313 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 DYMQ7RTS9 669 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 CLASP1Q7Z460 1538 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 UNC5CLQ8IV45 518 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 FAM193BQ96PV7 902 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-224ENST00000478916 TEKT3Q9BXF9 490 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 IFT122Q9HBG6 1241 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 ARHGEF9O43307 516 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 TNNI1P19237 187 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 DEUP1Q05D60 604 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 ARMC9Q7Z3E5 817 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 IL17REQ8NFR9 667 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 VPS54Q9P1Q0 977 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 HECW2Q9P2P5 1572 aa9.62□□□□□ -0.87
SYNE1-224ENST00000478916 FRMPD2Q68DX3 1309 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 TRPA1O75762 1119 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 CIAO1O76071 339 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 RAP1GDS1P52306 607 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 TSPOAP1O95153 1857 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 MED23Q9ULK4 1368 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 GNGT2O14610 69 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 KRT80Q6KB66 452 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 TRIM42Q8IWZ5 723 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 GUCY2CP25092 1073 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 KIF11P52732 1056 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 ADKP55263 362 aaKnown RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 CCDC17Q96LX7 622 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 XPO4Q9C0E2 1151 aaKnown RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 RTEL1Q9NZ71 1219 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 TBC1D7Q9P0N9 293 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 EEF1B2P24534 225 aaKnown RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 LONP1P36776 959 aaKnown RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 ASPHQ12797 758 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 PIP4K2CQ8TBX8 421 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 RABGGTAQ92696 567 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 CCPG1Q9ULG6 757 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 KCNJ14Q9UNX9 436 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 PLCB4Q15147 1175 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 TTC19Q6DKK2 380 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 BLIDQ8IZY5 108 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 LRRC47Q8N1G4 583 aaKnown RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 PNMA1Q8ND90 353 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 OR8K1Q8NGG5 319 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 RAB20Q9NX57 234 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 ZNF215Q9UL58 517 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-224ENST00000478916 KDM2BQ8NHM5 1336 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 ESYT2A0FGR8 921 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 TNNC2P02585 160 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 RCN2Q14257 317 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 NRBP2Q9NSY0 501 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 PPP2R2CQ9Y2T4 447 aa9.61□□□□□ -0.87
SYNE1-224ENST00000478916 LIG4P49917 911 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms