RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 MCM3APO60318 1980 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 CFBP00751 764 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 ALDH5A1P51649 535 aaPredicted RBP16.48■□□□□ 0.23
VAMP4-203ENST00000474047 PDE4DQ08499 809 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 PRPF38BQ5VTL8 546 aaKnown RBP16.48■□□□□ 0.23
VAMP4-203ENST00000474047 SGMS1Q86VZ5 419 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 FANCBQ8NB91 859 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 DNERQ8NFT8 737 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 KCNB2Q92953 911 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 MTMR8Q96EF0 704 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 MAF1Q9H063 256 aa16.48■□□□□ 0.23
VAMP4-203ENST00000474047 BAZ2BQ9UIF8 2168 aaKnown RBP16.47■□□□□ 0.23
VAMP4-203ENST00000474047 LOC102724159A0A0B4J2E5 919 aa16.47■□□□□ 0.23
VAMP4-203ENST00000474047 EIF5BO60841 1220 aaKnown RBP16.47■□□□□ 0.23
VAMP4-203ENST00000474047 PGK1P00558 417 aa16.47■□□□□ 0.23
VAMP4-203ENST00000474047 SMARCA1P28370 1054 aa16.47■□□□□ 0.23
VAMP4-203ENST00000474047 MNX1P50219 401 aaPredicted RBP16.47■□□□□ 0.23
VAMP4-203ENST00000474047 PWP2Q15269 919 aaKnown RBP16.47■□□□□ 0.23
VAMP4-203ENST00000474047 SPZ1Q9BXG8 430 aa16.47■□□□□ 0.23
VAMP4-203ENST00000474047 USP26Q9BXU7 913 aa16.47■□□□□ 0.23
VAMP4-203ENST00000474047 FRMPD3Q5JV73 1810 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 ZBTB43O43298 467 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 CYTH3O43739 400 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 CPA1P15085 419 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 CASTP20810 708 aaKnown RBP16.46■□□□□ 0.23
VAMP4-203ENST00000474047 TNFAIP2Q03169 654 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 LRRC41Q15345 812 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 CCDC82Q8N4S0 544 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 TBC1D5Q92609 795 aa16.46■□□□□ 0.23
VAMP4-203ENST00000474047 LENG1Q96BZ8 264 aaPredicted RBP16.46■□□□□ 0.23
VAMP4-203ENST00000474047 DDX49Q9Y6V7 483 aaKnown RBP16.46■□□□□ 0.23
VAMP4-203ENST00000474047 KLF18A0A0U1RQI7 1052 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 TNRC18O15417 2968 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 DUSP11O75319 330 aaKnown RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 PLEKHA8P1O95397 391 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 APOA5Q6Q788 366 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 Q6ZUG5 572 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 FBXO16Q8IX29 292 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 CMTR1Q8N1G2 835 aaKnown RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 NSUN6Q8TEA1 469 aaKnown RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 VTA1Q9NP79 307 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 RBM28Q9NW13 759 aaKnown RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 ASTN1O14525 1302 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 PPP1R11O60927 126 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 C6orf222P0C671 652 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 SLC35G1Q2M3R5 365 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 ARHGEF16Q5VV41 709 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 IQSEC1Q6DN90 963 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 SRBD1Q8N5C6 995 aaKnown RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 SYTL5Q8TDW5 730 aaPredicted RBP16.45■□□□□ 0.22
VAMP4-203ENST00000474047 FERMT2Q96AC1 680 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 RMDN3Q96TC7 470 aa16.45■□□□□ 0.22
VAMP4-203ENST00000474047 GOLGA8AA7E2F4 631 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 GOLGA8BA8MQT2 603 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 COL6A1P12109 1028 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 RPS6KB1P23443 525 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 ADCYAP1R1P41586 468 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 ATN1P54259 1190 aaPredicted RBP16.44■□□□□ 0.22
VAMP4-203ENST00000474047 RTN1Q16799 776 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 C7orf61Q8IZ16 206 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 MORC4Q8TE76 937 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 TAAR1Q96RJ0 339 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 KATNBL1Q9H079 304 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 AP5M1Q9H0R1 490 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 MAP3K20Q9NYL2 800 aaKnown RBP16.44■□□□□ 0.22
VAMP4-203ENST00000474047 BRPF3Q9ULD4 1205 aa16.44■□□□□ 0.22
VAMP4-203ENST00000474047 H0YGN5 161 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 GCOM1H8Y6P7 765 aaPredicted RBP16.43■□□□□ 0.22
VAMP4-203ENST00000474047 POLR2MP0CAP2 368 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 TMTC3Q6ZXV5 915 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 SAMD3Q8N6K7 520 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 BRF1Q92994 677 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 CUL5Q93034 780 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 PDGFCQ9NRA1 345 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 CYP46A1Q9Y6A2 500 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 SYNRGQ9UMZ2 1314 aa16.43■□□□□ 0.22
VAMP4-203ENST00000474047 HOXA13P31271 388 aaPredicted RBP16.42■□□□□ 0.22
VAMP4-203ENST00000474047 APOBRQ0VD83 1088 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 GNASQ5JWF2 1037 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 VTI1AQ96AJ9 217 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 IWS1Q96ST2 819 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 BRCA2P51587 3418 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 CCDC196A0A1B0GTZ2 297 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.42■□□□□ 0.22
VAMP4-203ENST00000474047 DYNC1LI2O43237 492 aaPredicted RBP16.42■□□□□ 0.22
VAMP4-203ENST00000474047 EIF2AK2P19525 551 aaKnown RBP16.42■□□□□ 0.22
VAMP4-203ENST00000474047 HSD17B4P51659 736 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 STXBP2Q15833 593 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 LRRC26Q2I0M4 334 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 TAPT1Q6NXT6 567 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 RUFY3Q7L099 469 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 FCHSD1Q86WN1 690 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 PCSK9Q8NBP7 692 aaKnown RBP16.42■□□□□ 0.22
VAMP4-203ENST00000474047 TSEN34Q9BSV6 310 aaKnown RBP16.42■□□□□ 0.22
VAMP4-203ENST00000474047 WDR11Q9BZH6 1224 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 COL20A1Q9P218 1284 aa16.42■□□□□ 0.22
VAMP4-203ENST00000474047 LCTP09848 1927 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 hCG_1642624A0A1W2PR95 340 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 ADAMTS4O75173 837 aa16.41■□□□□ 0.22
VAMP4-203ENST00000474047 SMPD1P17405 629 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms