RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TMEM199Q8N511 208 aa20.53■□□□□ 0.88
COL7A1-208ENST00000470076 TTYH1Q9H313 450 aaPredicted RBP20.53■□□□□ 0.88
COL7A1-208ENST00000470076 NEDD4P46934 1319 aa20.53■□□□□ 0.88
COL7A1-208ENST00000470076 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.52■□□□□ 0.88
COL7A1-208ENST00000470076 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.52■□□□□ 0.88
COL7A1-208ENST00000470076 ITGA7Q13683 1181 aa20.52■□□□□ 0.88
COL7A1-208ENST00000470076 DUSP28Q4G0W2 176 aa20.52■□□□□ 0.88
COL7A1-208ENST00000470076 RNF207Q6ZRF8 634 aa20.52■□□□□ 0.88
COL7A1-208ENST00000470076 IQCA1Q86XH1 822 aa20.52■□□□□ 0.88
COL7A1-208ENST00000470076 EXOC6Q8TAG9 804 aa20.52■□□□□ 0.88
COL7A1-208ENST00000470076 CLEC4DQ8WXI8 215 aa20.52■□□□□ 0.88
COL7A1-208ENST00000470076 MPHOSPH6Q99547 160 aaKnown RBP20.52■□□□□ 0.88
COL7A1-208ENST00000470076 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.52■□□□□ 0.88
COL7A1-208ENST00000470076 CALML3P27482 149 aa20.51■□□□□ 0.87
COL7A1-208ENST00000470076 SLC30A10Q6XR72 485 aa20.51■□□□□ 0.87
COL7A1-208ENST00000470076 ZKSCAN3Q9BRR0 538 aa20.51■□□□□ 0.87
COL7A1-208ENST00000470076 DSCC1Q9BVC3 393 aa20.51■□□□□ 0.87
COL7A1-208ENST00000470076 PPP1R12CQ9BZL4 782 aa20.51■□□□□ 0.87
COL7A1-208ENST00000470076 CDH23Q9H251 3354 aa20.51■□□□□ 0.87
COL7A1-208ENST00000470076 RBM47A0AV96 593 aaKnown RBP20.5■□□□□ 0.87
COL7A1-208ENST00000470076 KDM4AO75164 1064 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 CSF2RAP15509 400 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 PTGS1P23219 599 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 RPS6P62753 249 aaKnown RBP20.5■□□□□ 0.87
COL7A1-208ENST00000470076 TMEM63BQ5T3F8 832 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 PSRC1Q6PGN9 363 aaPredicted RBP20.5■□□□□ 0.87
COL7A1-208ENST00000470076 C16orf59Q7L2K0 433 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 PNMA1Q8ND90 353 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 DNERQ8NFT8 737 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 WDR11Q9BZH6 1224 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 EYSQ5T1H1 3165 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 GRIN2DO15399 1336 aa20.5■□□□□ 0.87
COL7A1-208ENST00000470076 IMMTQ16891 758 aaKnown RBP20.49■□□□□ 0.87
COL7A1-208ENST00000470076 TMEM240Q5SV17 173 aa20.49■□□□□ 0.87
COL7A1-208ENST00000470076 ANKS1AQ92625 1134 aa20.49■□□□□ 0.87
COL7A1-208ENST00000470076 MAF1Q9H063 256 aa20.49■□□□□ 0.87
COL7A1-208ENST00000470076 KAT14Q9H8E8 782 aa20.49■□□□□ 0.87
COL7A1-208ENST00000470076 POLR3EQ9NVU0 708 aa20.49■□□□□ 0.87
COL7A1-208ENST00000470076 CTNNA3Q9UI47 895 aa20.49■□□□□ 0.87
COL7A1-208ENST00000470076 B4DLN1 442 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 GOLGA8HP0CJ92 632 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 DNAJB2P25686 324 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 CYP2C18P33260 490 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 CPT1AP50416 773 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 MRPL12P52815 198 aaKnown RBP20.48■□□□□ 0.87
COL7A1-208ENST00000470076 PDE4DQ08499 809 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 RASIP1Q5U651 963 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.48■□□□□ 0.87
COL7A1-208ENST00000470076 RGS22Q8NE09 1264 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 MYLIPQ8WY64 445 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 ZSCAN10Q96SZ4 725 aaPredicted RBP20.48■□□□□ 0.87
COL7A1-208ENST00000470076 HIPK3Q9H422 1215 aa20.48■□□□□ 0.87
COL7A1-208ENST00000470076 B4E1Z4 1266 aa20.47■□□□□ 0.87
COL7A1-208ENST00000470076 EDNRBP24530 442 aa20.47■□□□□ 0.87
COL7A1-208ENST00000470076 USH1GQ495M9 461 aa20.47■□□□□ 0.87
COL7A1-208ENST00000470076 ZNF365Q70YC5 407 aa20.47■□□□□ 0.87
COL7A1-208ENST00000470076 MAFAQ8NHW3 353 aaPredicted RBP20.47■□□□□ 0.87
COL7A1-208ENST00000470076 UBA5Q9GZZ9 404 aa20.47■□□□□ 0.87
COL7A1-208ENST00000470076 IL23AQ9NPF7 189 aa20.47■□□□□ 0.87
COL7A1-208ENST00000470076 PRUNE2Q8WUY3 3088 aa20.47■□□□□ 0.87
COL7A1-208ENST00000470076 NKRFO15226 690 aaKnown RBP eCLIP20.46■□□□□ 0.87
COL7A1-208ENST00000470076 B4GALT4O60513 344 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 ACRP10323 421 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 PSMC6P62333 389 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 PPP2R5BQ15173 497 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 ASPRV1Q53RT3 343 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 BRDTQ58F21 947 aaPredicted RBP20.46■□□□□ 0.87
COL7A1-208ENST00000470076 ENAHQ8N8S7 591 aaPredicted RBP20.46■□□□□ 0.87
COL7A1-208ENST00000470076 SCFD2Q8WU76 684 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 KRT23Q9C075 422 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 TRPV6Q9H1D0 765 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 CPVLQ9H3G5 476 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 CNNM2Q9H8M5 875 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 ZSWIM5Q9P217 1185 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 RAD50Q92878 1312 aa20.46■□□□□ 0.87
COL7A1-208ENST00000470076 MYH6P13533 1939 aa20.45■□□□□ 0.86
COL7A1-208ENST00000470076 FOSL2P15408 326 aa20.45■□□□□ 0.86
COL7A1-208ENST00000470076 PURAQ00577 322 aaKnown RBP20.45■□□□□ 0.86
COL7A1-208ENST00000470076 CDC37Q16543 378 aaPredicted RBP20.45■□□□□ 0.86
COL7A1-208ENST00000470076 OR6J1Q8NGC5 347 aa20.45■□□□□ 0.86
COL7A1-208ENST00000470076 TIFAQ96CG3 184 aa20.45■□□□□ 0.86
COL7A1-208ENST00000470076 NOC4LQ9BVI4 516 aaKnown RBP20.45■□□□□ 0.86
COL7A1-208ENST00000470076 ALDH8A1Q9H2A2 487 aaPredicted RBP20.45■□□□□ 0.86
COL7A1-208ENST00000470076 MTIF3Q9H2K0 278 aaKnown RBP20.45■□□□□ 0.86
COL7A1-208ENST00000470076 GPHNQ9NQX3 736 aaPredicted RBP20.45■□□□□ 0.86
COL7A1-208ENST00000470076 ABCB11O95342 1321 aa20.45■□□□□ 0.86
COL7A1-208ENST00000470076 ADGRF4Q8IZF3 695 aa20.44■□□□□ 0.86
COL7A1-208ENST00000470076 HERVK_113Q902F9 699 aa20.44■□□□□ 0.86
COL7A1-208ENST00000470076 UBAC1Q9BSL1 405 aa20.44■□□□□ 0.86
COL7A1-208ENST00000470076 MTG1Q9BT17 334 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-208ENST00000470076 TNKSO95271 1327 aa20.44■□□□□ 0.86
COL7A1-208ENST00000470076 UMODL1Q5DID0 1318 aa20.44■□□□□ 0.86
COL7A1-208ENST00000470076 SCN10AQ9Y5Y9 1956 aa20.43■□□□□ 0.86
COL7A1-208ENST00000470076 KPNA6O60684 536 aa20.43■□□□□ 0.86
COL7A1-208ENST00000470076 FGBP02675 491 aa20.43■□□□□ 0.86
COL7A1-208ENST00000470076 MYL3P08590 195 aa20.43■□□□□ 0.86
COL7A1-208ENST00000470076 PARP1P09874 1014 aaKnown RBP20.43■□□□□ 0.86
COL7A1-208ENST00000470076 SUPT20HL2P0C7V6 817 aa20.43■□□□□ 0.86
COL7A1-208ENST00000470076 ZNF576Q9H609 170 aa20.43■□□□□ 0.86
COL7A1-208ENST00000470076 MYO9BQ13459 2157 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms