RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 TTBK2Q6IQ55 1244 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 RASGRP2Q7LDG7 609 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 APTXQ7Z2E3 356 aaKnown RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 DEFB132Q7Z7B7 95 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 FCHSD1Q86WN1 690 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 REM2Q8IYK8 340 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 GRAMD1CQ8IYS0 662 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 GIMAP8Q8ND71 665 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 NOC3LQ8WTT2 800 aaKnown RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CCDC47Q96A33 483 aaKnown RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 COA7Q96BR5 231 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 FAM212AQ96EL1 285 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CALML4Q96GE6 196 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 TMX1Q9H3N1 280 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 SH2D4AQ9H788 454 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 ARHGEF10LQ9HCE6 1279 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 BIN2Q9UBW5 565 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 MTMR7Q9Y216 660 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CD2APQ9Y5K6 639 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 ARFGEF1Q9Y6D6 1849 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CNTNAP1P78357 1384 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 FER1L6Q2WGJ9 1857 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 COL4A5P29400 1685 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 PVALEFA0A1B0GWK0 134 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 PSDA5PKW4 1024 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 CCP110O43303 1012 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 KLRC4O43908 158 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 GH2P01242 217 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 CYP3A4P08684 503 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 SKILP12757 684 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 SFPQP23246 707 aaKnown RBP eCLIP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 CIITAP33076 1130 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 TNNI2P48788 182 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 EIF6P56537 245 aaKnown RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 CXCL9Q07325 125 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 LRMPQ12912 555 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 STIM1Q13586 685 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 KARSQ15046 597 aaKnown RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 CDC37Q16543 378 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 Q4G0T1 1027 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 SYDE2Q5VT97 1194 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 SPECC1LQ69YQ0 1117 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 ISM2Q6H9L7 571 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 KCTD1Q719H9 257 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 FILIP1Q7Z7B0 1213 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 CLEC10AQ8IUN9 316 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 SLFN12Q8IYM2 578 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 ADSSL1Q8N142 457 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 CHURC1Q8WUH1 139 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 DPF2Q92785 391 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 DHTKD1Q96HY7 919 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 MMTAG2Q9BU76 263 aaKnown RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 PDGFDQ9GZP0 370 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 TAOK3Q9H2K8 898 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 GOPCQ9HD26 462 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 KCNMB3Q9NPA1 279 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 ZNF277Q9NRM2 450 aaPredicted RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 LRWD1Q9UFC0 647 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 LIMA1Q9UHB6 759 aaKnown RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 PCDHA1Q9Y5I3 950 aa8.57□□□□□ -1.04
COL6A3-208ENST00000468792 BRCA1P38398 1863 aaKnown RBP8.57□□□□□ -1.04
COL6A3-208ENST00000468792 ITIH6Q6UXX5 1313 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 SYNRGQ9UMZ2 1314 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 MEIS2O14770 477 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 RAD17O75943 681 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 ASNSP08243 561 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 CD44P16070 742 aaKnown RBP8.56□□□□□ -1.04
COL6A3-208ENST00000468792 PLCG1P19174 1290 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 CDK11BP21127 795 aaKnown RBP8.56□□□□□ -1.04
COL6A3-208ENST00000468792 GTF2F1P35269 517 aaKnown RBP eCLIP8.56□□□□□ -1.04
COL6A3-208ENST00000468792 SREBF1P36956 1147 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 PBX1P40424 430 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 NUBP1P53384 320 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 ATP2B2Q01814 1243 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 PAK1Q13153 545 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 PSMD2Q13200 908 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 TNFAIP1Q13829 316 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 FILIP1LQ4L180 1135 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 TMEM119Q4V9L6 283 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 KRT79Q5XKE5 535 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 CIAPIN1Q6FI81 312 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 ARMCX5Q6P1M9 558 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 SV2BQ7L1I2 683 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 TMC6Q7Z403 805 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 FAM160B2Q86V87 743 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 FBXO11Q86XK2 927 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 SAMD3Q8N6K7 520 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 JDP2Q8WYK2 163 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 FAM20AQ96MK3 541 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 NAP1L5Q96NT1 182 aaPredicted RBP8.56□□□□□ -1.04
COL6A3-208ENST00000468792 TRIM9Q9C026 710 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 NT5C3AQ9H0P0 336 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 INTS13Q9NVM9 706 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 TMEM260Q9NX78 707 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 ADD3Q9UEY8 706 aaKnown RBP8.56□□□□□ -1.04
COL6A3-208ENST00000468792 DDX25Q9UHL0 483 aaKnown RBP8.56□□□□□ -1.04
COL6A3-208ENST00000468792 PNMA2Q9UL42 364 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 ZBTB21Q9ULJ3 1066 aa8.56□□□□□ -1.04
COL6A3-208ENST00000468792 KDM3AQ9Y4C1 1321 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms