RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ZNF396Q96N95 335 aaPredicted RBP13.57□□□□□ -0.24
USP54-209ENST00000464635 ZKSCAN3Q9BRR0 538 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 NYAP2Q9P242 653 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 ZMYND8Q9ULU4 1186 aaPredicted RBP13.57□□□□□ -0.24
USP54-209ENST00000464635 MORC2Q9Y6X9 1032 aaPredicted RBP13.57□□□□□ -0.24
USP54-209ENST00000464635 MCM3APO60318 1980 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 MYH6P13533 1939 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 MYH15Q9Y2K3 1946 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 VWA5AO00534 786 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 U2AF2P26368 475 aaKnown RBP eCLIP13.56□□□□□ -0.24
USP54-209ENST00000464635 CNGA1P29973 690 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 UBE2HP62256 183 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 GRM4Q14833 912 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 TMTC3Q6ZXV5 915 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 DPP9Q86TI2 863 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 LRRC47Q8N1G4 583 aaKnown RBP13.56□□□□□ -0.24
USP54-209ENST00000464635 CEP95Q96GE4 821 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 ALG1Q9BT22 464 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 MROH8Q9H579 483 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 SH3GLB2Q9NR46 395 aa13.56□□□□□ -0.24
USP54-209ENST00000464635 DDX20Q9UHI6 824 aaKnown RBP13.56□□□□□ -0.24
USP54-209ENST00000464635 ZNF214Q9UL59 606 aaPredicted RBP13.56□□□□□ -0.24
USP54-209ENST00000464635 LTBP2Q14767 1821 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 DNAH12Q6ZR08 3092 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 F5H6K3 240 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 STRNO43815 780 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 PRPF40AO75400 957 aaKnown RBP13.55□□□□□ -0.24
USP54-209ENST00000464635 SYN1P17600 705 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 AKAP17AQ02040 695 aaKnown RBP13.55□□□□□ -0.24
USP54-209ENST00000464635 KLRC3Q07444 240 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 TRIM29Q14134 588 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 FAM47AQ5JRC9 791 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 ANO1Q5XXA6 986 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 OLFML2BQ68BL8 750 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 RIOX2Q8IUF8 465 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 PNMA1Q8ND90 353 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 FOXP1Q9H334 677 aaPredicted RBP13.55□□□□□ -0.24
USP54-209ENST00000464635 MTMR4Q9NYA4 1195 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 CLIP2Q9UDT6 1046 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 RCOR1Q9UKL0 485 aa13.55□□□□□ -0.24
USP54-209ENST00000464635 DDX49Q9Y6V7 483 aaKnown RBP13.55□□□□□ -0.24
USP54-209ENST00000464635 PALM3A6NDB9 673 aaPredicted RBP13.54□□□□□ -0.24
USP54-209ENST00000464635 hCG_1984214I3L0E3 225 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 SLC25A27O95847 323 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 TTLL1O95922 423 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 PGK2P07205 417 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 SNHG28P0DPA3 235 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 LRRC26Q2I0M4 334 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 PRAMEF19Q5SWL8 479 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 GALNT17Q6IS24 598 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 ABRAQ8N0Z2 381 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 ZNF713Q8N859 430 aaPredicted RBP13.54□□□□□ -0.24
USP54-209ENST00000464635 NUP133Q8WUM0 1156 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 MAML3Q96JK9 1138 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 MMP19Q99542 508 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 SLF1Q9BQI6 1058 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 TMEM47Q9BQJ4 181 aa13.54□□□□□ -0.24
USP54-209ENST00000464635 FCER1AP12319 257 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 STAT3P40763 770 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 DNM1Q05193 864 aaKnown RBP13.53□□□□□ -0.24
USP54-209ENST00000464635 GSE1Q14687 1217 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 SAFBQ15424 915 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP54-209ENST00000464635 KRT40Q6A162 431 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 RASGRP2Q7LDG7 609 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 TEX2Q8IWB9 1127 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 SYAP1Q96A49 352 aaPredicted RBP13.53□□□□□ -0.24
USP54-209ENST00000464635 SPZ1Q9BXG8 430 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 SLC26A6Q9BXS9 759 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 POLR3EQ9NVU0 708 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 RTEL1Q9NZ71 1219 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 RIPK3Q9Y572 518 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 LRRC37A2A6NM11 1700 aa13.53□□□□□ -0.24
USP54-209ENST00000464635 LCTP09848 1927 aa13.52□□□□□ -0.24
USP54-209ENST00000464635 LETM1O95202 739 aaPredicted RBP13.52□□□□□ -0.25
USP54-209ENST00000464635 YEATS4O95619 227 aa13.52□□□□□ -0.25
USP54-209ENST00000464635 MMP1P03956 469 aa13.52□□□□□ -0.25
USP54-209ENST00000464635 PKN1Q16512 942 aa13.52□□□□□ -0.25
USP54-209ENST00000464635 ASPRV1Q53RT3 343 aa13.52□□□□□ -0.25
USP54-209ENST00000464635 SNRNP48Q6IEG0 339 aaKnown RBP13.52□□□□□ -0.25
USP54-209ENST00000464635 GDF15Q99988 308 aa13.52□□□□□ -0.25
USP54-209ENST00000464635 MYL10Q9BUA6 226 aa13.52□□□□□ -0.25
USP54-209ENST00000464635 MAD2L2Q9UI95 211 aa13.52□□□□□ -0.25
USP54-209ENST00000464635 CNTNAP5Q8WYK1 1306 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 SOX1O00570 391 aaPredicted RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 NMT2O60551 498 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 MSCO60682 206 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 TAL1P17542 331 aaPredicted RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 RXRAP19793 462 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 MAGEA10P43363 369 aaPredicted RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 NASPP49321 788 aaPredicted RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 PFKFB3Q16875 520 aaPredicted RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 ZNF792Q3KQV3 632 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 GPATCH4Q5T3I0 446 aaKnown RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 GJC2Q5T442 439 aaPredicted RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 SLFN13Q68D06 897 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 CPXCR1Q8N123 301 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 SRBD1Q8N5C6 995 aaKnown RBP13.51□□□□□ -0.25
USP54-209ENST00000464635 GMCL1P1Q8NEA9 526 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 PHKBQ93100 1093 aa13.51□□□□□ -0.25
USP54-209ENST00000464635 KIFC2Q96AC6 838 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms