RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 PDLIM7Q9NR12 457 aa9.03□□□□□ -0.96
PTCD3-205ENST00000464541 PFDN2Q9UHV9 154 aa9.03□□□□□ -0.96
PTCD3-205ENST00000464541 KDM2BQ8NHM5 1336 aa9.03□□□□□ -0.96
PTCD3-205ENST00000464541 PABPC1P11940 636 aaKnown RBP9.02□□□□□ -0.97
PTCD3-205ENST00000464541 ERVFRD-1P60508 538 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 CYP4F8P98187 520 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 MVKQ03426 396 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 BMS1Q14692 1282 aaKnown RBP9.02□□□□□ -0.97
PTCD3-205ENST00000464541 NSMFQ6X4W1 530 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 DPH6Q7L8W6 267 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 DIO2Q92813 273 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 DNAJC7Q99615 494 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 USP35Q9P2H5 1018 aa9.02□□□□□ -0.97
PTCD3-205ENST00000464541 C7orf72A4D263 438 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 HRKO00198 91 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 PRODHO43272 600 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 DLX3O60479 287 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 DIAPH1O60610 1272 aaKnown RBP9.01□□□□□ -0.97
PTCD3-205ENST00000464541 LTBRP36941 435 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 GTF2A2P52657 109 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 SF1Q15637 639 aaKnown RBP9.01□□□□□ -0.97
PTCD3-205ENST00000464541 RSPO2Q6UXX9 243 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-205ENST00000464541 CPNE8Q86YQ8 564 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 SCUBE1Q8IWY4 988 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 PPIL6Q8IXY8 311 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 THAP3Q8WTV1 239 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-205ENST00000464541 OSBP2Q969R2 916 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 LIN37Q96GY3 246 aaPredicted RBP9.01□□□□□ -0.97
PTCD3-205ENST00000464541 IPO9Q96P70 1041 aaKnown RBP9.01□□□□□ -0.97
PTCD3-205ENST00000464541 FMNL2Q96PY5 1086 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 SLC26A8Q96RN1 970 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 RNF114Q9Y508 228 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 NPFFR2Q9Y5X5 522 aa9.01□□□□□ -0.97
PTCD3-205ENST00000464541 OR14I1A6ND48 311 aa9□□□□□ -0.97
PTCD3-205ENST00000464541 TNFRSF12AQ9NP84 129 aa9□□□□□ -0.97
PTCD3-205ENST00000464541 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9□□□□□ -0.97
PTCD3-205ENST00000464541 LRRC10BA6NIK2 292 aa8.99□□□□□ -0.97
PTCD3-205ENST00000464541 ABLIM1O14639 778 aa8.99□□□□□ -0.97
PTCD3-205ENST00000464541 SRGAP3O43295 1099 aa8.99□□□□□ -0.97
PTCD3-205ENST00000464541 MYO1BO43795 1136 aa8.99□□□□□ -0.97
PTCD3-205ENST00000464541 TMEM62Q0P6H9 643 aa8.99□□□□□ -0.97
PTCD3-205ENST00000464541 PRSS53Q2L4Q9 553 aa8.99□□□□□ -0.97
PTCD3-205ENST00000464541 CDC6Q99741 560 aa8.99□□□□□ -0.97
PTCD3-205ENST00000464541 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.99□□□□□ -0.97
PTCD3-205ENST00000464541 CCDC163A0A0D9SF12 145 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 A0A1W2PQJ5 194 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 MPOP05164 745 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 SUMO1P63165 101 aaKnown RBP8.98□□□□□ -0.97
PTCD3-205ENST00000464541 NR1I3Q14994 352 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 C2orf27AQ580R0 203 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 OLFML2BQ68BL8 750 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 MBLAC2Q68D91 279 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 DENND5AQ6IQ26 1287 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 CCDC103Q8IW40 242 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 SIRT2Q8IXJ6 389 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 LZTR1Q8N653 840 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 ZSWIM2Q8NEG5 633 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 DCAF4Q8WV16 495 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 ZFYVE21Q9BQ24 234 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 EPB41L4BQ9H329 900 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 GPR27Q9NS67 375 aa8.98□□□□□ -0.97
PTCD3-205ENST00000464541 TIMM13Q9Y5L4 95 aaPredicted RBP8.98□□□□□ -0.97
PTCD3-205ENST00000464541 TRBV23-1A0A0A0MS06 115 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 FAM153BP0C7A2 387 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 MSL3P1P0C860 447 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 PDE6BP35913 854 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 RPL11P62913 178 aaKnown RBP8.97□□□□□ -0.97
PTCD3-205ENST00000464541 KIR3DS1Q14943 382 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 INF2Q27J81 1249 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 ADGRF1Q5T601 910 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 CABP7Q86V35 215 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 MTA3Q9BTC8 594 aa8.97□□□□□ -0.97
PTCD3-205ENST00000464541 ZNF552Q9H707 407 aaPredicted RBP8.97□□□□□ -0.97
PTCD3-205ENST00000464541 TMEFF2Q9UIK5 374 aaPredicted RBP8.97□□□□□ -0.97
PTCD3-205ENST00000464541 PEX10O60683 326 aa8.96□□□□□ -0.98
PTCD3-205ENST00000464541 CYBBP04839 570 aa8.96□□□□□ -0.98
PTCD3-205ENST00000464541 GALK1P51570 392 aa8.96□□□□□ -0.98
PTCD3-205ENST00000464541 CBX2Q14781 532 aaPredicted RBP8.96□□□□□ -0.98
PTCD3-205ENST00000464541 MLANAQ16655 118 aa8.96□□□□□ -0.98
PTCD3-205ENST00000464541 YOD1Q5VVQ6 348 aaPredicted RBP8.96□□□□□ -0.98
PTCD3-205ENST00000464541 Q8N1Y9 231 aa8.96□□□□□ -0.98
PTCD3-205ENST00000464541 DHRS4Q9BTZ2 278 aa8.96□□□□□ -0.98
PTCD3-205ENST00000464541 NSUN3Q9H649 340 aaKnown RBP8.96□□□□□ -0.98
PTCD3-205ENST00000464541 ARNTLO00327 626 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 YBX1P67809 324 aaKnown RBP8.95□□□□□ -0.98
PTCD3-205ENST00000464541 BICRALQ6AI39 1079 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 STYK1Q6J9G0 422 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 PAQR3Q6TCH7 311 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 PRR23BQ6ZRT6 265 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 USP53Q70EK8 1073 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 LILRB2Q8N423 598 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 NETO2Q8NC67 525 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 RCBTB1Q8NDN9 531 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 DCP1AQ9NPI6 582 aaPredicted RBP8.95□□□□□ -0.98
PTCD3-205ENST00000464541 GULP1Q9UBP9 304 aa8.95□□□□□ -0.98
PTCD3-205ENST00000464541 GLI4P10075 376 aa8.94□□□□□ -0.98
PTCD3-205ENST00000464541 MAMDC2Q7Z304 686 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-205ENST00000464541 POU5F2Q8N7G0 328 aa8.94□□□□□ -0.98
PTCD3-205ENST00000464541 FBXO15Q8NCQ5 510 aaPredicted RBP8.94□□□□□ -0.98
PTCD3-205ENST00000464541 DPF3Q92784 378 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms