RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 COL25A1Q9BXS0 654 aaPredicted RBP17.31■□□□□ 0.36
SMPD4-216ENST00000461187 TANC1Q9C0D5 1861 aa17.31■□□□□ 0.36
SMPD4-216ENST00000461187 ZEB2O60315 1214 aa17.3■□□□□ 0.36
SMPD4-216ENST00000461187 SNHG28P0DPA3 235 aa17.3■□□□□ 0.36
SMPD4-216ENST00000461187 PCP11498 1178 aaKnown RBP17.3■□□□□ 0.36
SMPD4-216ENST00000461187 CYP2C18P33260 490 aa17.3■□□□□ 0.36
SMPD4-216ENST00000461187 ZNF543Q08ER8 600 aa17.3■□□□□ 0.36
SMPD4-216ENST00000461187 AAMPQ13685 434 aa17.3■□□□□ 0.36
SMPD4-216ENST00000461187 MFSD6Q6ZSS7 791 aa17.3■□□□□ 0.36
SMPD4-216ENST00000461187 KIAA1211Q6ZU35 1233 aa17.3■□□□□ 0.36
SMPD4-216ENST00000461187 ADD3Q9UEY8 706 aaKnown RBP17.3■□□□□ 0.36
SMPD4-216ENST00000461187 LOC102724159A0A0B4J2E5 919 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 PTPDC1A2A3K4 754 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 ACRP10323 421 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 FOSL2P15408 326 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 SDSP20132 328 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 GRIN2CQ14957 1233 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 PWP2Q15269 919 aaKnown RBP17.29■□□□□ 0.36
SMPD4-216ENST00000461187 DUSP28Q4G0W2 176 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 B4GALNT3Q6L9W6 998 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 SLC30A10Q6XR72 485 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 ZNF365Q70YC5 407 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 PLEKHM2Q8IWE5 1019 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 SEZ6LQ9BYH1 1024 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 CHD7Q9P2D1 2997 aa17.29■□□□□ 0.36
SMPD4-216ENST00000461187 NEDD4P46934 1319 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 UMODL1Q5DID0 1318 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 RBM47A0AV96 593 aaKnown RBP17.28■□□□□ 0.36
SMPD4-216ENST00000461187 GRXCR1A8MXD5 290 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 PSMC6P62333 389 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 PSRC1Q6PGN9 363 aaPredicted RBP17.28■□□□□ 0.36
SMPD4-216ENST00000461187 WDR11Q9BZH6 1224 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 HIPK3Q9H422 1215 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 OSBPL3Q9H4L5 887 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 IL23AQ9NPF7 189 aa17.28■□□□□ 0.36
SMPD4-216ENST00000461187 PTPRSQ13332 1948 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 WDR19Q8NEZ3 1342 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 B4GALT4O60513 344 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 IGHDP01880 384 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 CALML3P27482 149 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 PBX2P40425 430 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 MFAP1P55081 439 aaKnown RBP17.27■□□□□ 0.36
SMPD4-216ENST00000461187 RNF207Q6ZRF8 634 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 CHD1LQ86WJ1 897 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 TIFAQ96CG3 184 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 ZKSCAN3Q9BRR0 538 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 NOC4LQ9BVI4 516 aaKnown RBP17.27■□□□□ 0.36
SMPD4-216ENST00000461187 TRPV6Q9H1D0 765 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 RWDD1Q9H446 243 aaPredicted RBP17.27■□□□□ 0.36
SMPD4-216ENST00000461187 RNF41Q9H4P4 317 aaPredicted RBP17.27■□□□□ 0.36
SMPD4-216ENST00000461187 ZNF576Q9H609 170 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 PNMA2Q9UL42 364 aa17.27■□□□□ 0.36
SMPD4-216ENST00000461187 TTC28Q96AY4 2481 aa17.26■□□□□ 0.35
SMPD4-216ENST00000461187 NCOR1O75376 2440 aa17.26■□□□□ 0.35
SMPD4-216ENST00000461187 RPS6P62753 249 aaKnown RBP17.26■□□□□ 0.35
SMPD4-216ENST00000461187 NUCB1Q02818 461 aa17.26■□□□□ 0.35
SMPD4-216ENST00000461187 HERVK_113Q902F9 699 aa17.26■□□□□ 0.35
SMPD4-216ENST00000461187 ESR2Q92731 530 aa17.26■□□□□ 0.35
SMPD4-216ENST00000461187 PBX4Q9BYU1 374 aa17.26■□□□□ 0.35
SMPD4-216ENST00000461187 SPTBN5Q9NRC6 3674 aaKnown RBP17.26■□□□□ 0.35
SMPD4-216ENST00000461187 ZNF213O14771 459 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 GOLGA8HP0CJ92 632 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 EDNRBP24530 442 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 PURAQ00577 322 aaKnown RBP17.25■□□□□ 0.35
SMPD4-216ENST00000461187 GPATCH4Q5T3I0 446 aaKnown RBP17.25■□□□□ 0.35
SMPD4-216ENST00000461187 CWC27Q6UX04 472 aaKnown RBP17.25■□□□□ 0.35
SMPD4-216ENST00000461187 DGKHQ86XP1 1220 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 DNERQ8NFT8 737 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 WNT8AQ9H1J5 351 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 ALDH8A1Q9H2A2 487 aaPredicted RBP17.25■□□□□ 0.35
SMPD4-216ENST00000461187 CPVLQ9H3G5 476 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 POLR3EQ9NVU0 708 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 CXXC1Q9P0U4 656 aaPredicted RBP17.25■□□□□ 0.35
SMPD4-216ENST00000461187 REV3LO60673 3130 aa17.25■□□□□ 0.35
SMPD4-216ENST00000461187 FGBP02675 491 aa17.24■□□□□ 0.35
SMPD4-216ENST00000461187 CPT1AP50416 773 aa17.24■□□□□ 0.35
SMPD4-216ENST00000461187 CCL23P55773 120 aa17.24■□□□□ 0.35
SMPD4-216ENST00000461187 PDE4DQ08499 809 aa17.24■□□□□ 0.35
SMPD4-216ENST00000461187 OR6J1Q8NGC5 347 aa17.24■□□□□ 0.35
SMPD4-216ENST00000461187 UBA5Q9GZZ9 404 aa17.24■□□□□ 0.35
SMPD4-216ENST00000461187 KDM4AO75164 1064 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 MYL3P08590 195 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 NT5C2P49902 561 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 USH1GQ495M9 461 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 IQCA1Q86XH1 822 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 PNMA1Q8ND90 353 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 RGS22Q8NE09 1264 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 ANKS1AQ92625 1134 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 VWCEQ96DN2 955 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 DIAPH3Q9NSV4 1193 aa17.23■□□□□ 0.35
SMPD4-216ENST00000461187 DOCK5Q9H7D0 1870 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 TRANK1O15050 2925 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 B4E1Z4 1266 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 NKRFO15226 690 aaKnown RBP eCLIP17.22■□□□□ 0.35
SMPD4-216ENST00000461187 PPP2R5BQ15173 497 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 CCDC178Q5BJE1 867 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 OTOP2Q7RTS6 562 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 USP38Q8NB14 1042 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 EXOC6Q8TAG9 804 aa17.22■□□□□ 0.35
SMPD4-216ENST00000461187 SCFD2Q8WU76 684 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms