RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CLK2P49760 499 aaKnown RBP12.6□□□□□ -0.39
SCN9A-205ENST00000454569 IRX3P78415 501 aaPredicted RBP12.6□□□□□ -0.39
SCN9A-205ENST00000454569 JAKMIP3Q5VZ66 844 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 DAGLBQ8NCG7 672 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 GDPD2Q9HCC8 539 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 RIC8AQ9NPQ8 531 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 CNPY2Q9Y2B0 182 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 ESYT2A0FGR8 921 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 XBP1P17861 261 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 HOXA13P31271 388 aaPredicted RBP12.6□□□□□ -0.39
SCN9A-205ENST00000454569 APLP1P51693 650 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 ADCY7P51828 1080 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 PLS1Q14651 629 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 MYSM1Q5VVJ2 828 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 SNRNP48Q6IEG0 339 aaKnown RBP12.6□□□□□ -0.39
SCN9A-205ENST00000454569 ANKRD23Q86SG2 305 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 NOSTRINQ8IVI9 506 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 RGS22Q8NE09 1264 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 CCDC148Q8NFR7 591 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 PURBQ96QR8 312 aaKnown RBP12.6□□□□□ -0.39
SCN9A-205ENST00000454569 PAGR1Q9BTK6 254 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 FOXP1Q9H334 677 aaPredicted RBP12.6□□□□□ -0.39
SCN9A-205ENST00000454569 PSTPIP2Q9H939 334 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 MYPNQ86TC9 1320 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 ZSWIM8A7E2V4 1837 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 MCM3APO60318 1980 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 PLXNB2O15031 1838 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 hCG_1984214I3L0E3 225 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 OSBPP22059 807 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 TIE1P35590 1138 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 CEBPZQ03701 1054 aaKnown RBP12.59□□□□□ -0.39
SCN9A-205ENST00000454569 PPP1R18Q6NYC8 613 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 PIK3AP1Q6ZUJ8 805 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 ZNF713Q8N859 430 aaPredicted RBP12.59□□□□□ -0.39
SCN9A-205ENST00000454569 USP28Q96RU2 1077 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 ZSCAN16Q9H4T2 348 aaPredicted RBP12.59□□□□□ -0.39
SCN9A-205ENST00000454569 C6orf50Q9HD87 102 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 COL20A1Q9P218 1284 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 CLIC4Q9Y696 253 aa12.59□□□□□ -0.39
SCN9A-205ENST00000454569 KIAA1217Q5T5P2 1943 aa12.58□□□□□ -0.39
SCN9A-205ENST00000454569 ABCB11O95342 1321 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 RASSF10A6NK89 507 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 TTLL13PA6NNM8 815 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 ATP2A1O14983 1001 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 ATP2B1P20020 1258 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 CALML3P27482 149 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 STAT3P40763 770 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 SAFBQ15424 915 aaKnown RBP eCLIP12.58□□□□□ -0.47e-6■■■□□ 18.2
SCN9A-205ENST00000454569 DEFB115Q30KQ5 88 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 CLEC17AQ6ZS10 378 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 CCDC102AQ96A19 550 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 HHIPL1Q96JK4 782 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 TRERF1Q96PN7 1200 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 RNF146Q9NTX7 359 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 PCDHB6Q9Y5E3 794 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 MRVI1Q9Y6F6 885 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 PLXNA1Q9UIW2 1896 aa12.58□□□□□ -0.4
SCN9A-205ENST00000454569 MGAMO43451 1857 aa12.57□□□□□ -0.4
SCN9A-205ENST00000454569 MANSC4A6NHS7 340 aaPredicted RBP12.57□□□□□ -0.4
SCN9A-205ENST00000454569 CFBP00751 764 aa12.57□□□□□ -0.4
SCN9A-205ENST00000454569 GNA11P29992 359 aa12.57□□□□□ -0.4
SCN9A-205ENST00000454569 GNL2Q13823 731 aaKnown RBP12.57□□□□□ -0.4
SCN9A-205ENST00000454569 INF2Q27J81 1249 aa12.57□□□□□ -0.4
SCN9A-205ENST00000454569 CCDC12Q8WUD4 166 aaPredicted RBP12.57□□□□□ -0.4
SCN9A-205ENST00000454569 CUL5Q93034 780 aa12.57□□□□□ -0.4
SCN9A-205ENST00000454569 CAPNS2Q96L46 248 aa12.57□□□□□ -0.4
SCN9A-205ENST00000454569 MOV10L1Q9BXT6 1211 aaKnown RBP12.57□□□□□ -0.4
SCN9A-205ENST00000454569 CTDP1Q9Y5B0 961 aaPredicted RBP12.57□□□□□ -0.4
SCN9A-205ENST00000454569 DDX49Q9Y6V7 483 aaKnown RBP12.57□□□□□ -0.4
SCN9A-205ENST00000454569 FDX1P10109 184 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 PDIA4P13667 645 aaKnown RBP12.56□□□□□ -0.4
SCN9A-205ENST00000454569 OAZ1P54368 228 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 GALNT17Q6IS24 598 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 SLC30A10Q6XR72 485 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 BRAPQ7Z569 592 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 FCHSD1Q86WN1 690 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 REXO1Q8N1G1 1221 aaKnown RBP12.56□□□□□ -0.4
SCN9A-205ENST00000454569 ANKRD13CQ8N6S4 541 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 TEX13BQ9BXU2 312 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 SPATC1LQ9H0A9 340 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 PORCNQ9H237 461 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 SLC45A1Q9Y2W3 748 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 MRPL11Q9Y3B7 192 aaKnown RBP12.56□□□□□ -0.4
SCN9A-205ENST00000454569 DOCK5Q9H7D0 1870 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 ADGRA2Q96PE1 1338 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 TM4SF4P48230 202 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 HSD17B4P51659 736 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 MRPL12P52815 198 aaKnown RBP12.56□□□□□ -0.4
SCN9A-205ENST00000454569 UBXN2AP68543 259 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 PABPC4Q13310 644 aaKnown RBP eCLIP12.56□□□□□ -0.4
SCN9A-205ENST00000454569 RIOX2Q8IUF8 465 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 TBCKQ8TEA7 893 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 CPA4Q9UI42 421 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 RABGAP1Q9Y3P9 1069 aa12.56□□□□□ -0.4
SCN9A-205ENST00000454569 CEP350Q5VT06 3117 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 PIK3CDO00329 1044 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 FIBPO43427 364 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 NCLP19338 710 aaKnown RBP12.55□□□□□ -0.4
SCN9A-205ENST00000454569 ERCC3P19447 782 aa12.55□□□□□ -0.4
SCN9A-205ENST00000454569 VEGFBP49765 207 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms