RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 C19orf67A6NJJ6 358 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 DLL1O00548 723 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 DYNC1LI2O43237 492 aaPredicted RBP8.29□□□□□ -1.08
VPS41-208ENST00000448833 SUPT20HL2P0C7V6 817 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 PDHBP11177 359 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 PDE4DQ08499 809 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 ZNF543Q08ER8 600 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 ITGA7Q13683 1181 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 BAATQ14032 418 aaPredicted RBP8.29□□□□□ -1.08
VPS41-208ENST00000448833 DUSP28Q4G0W2 176 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 MUM1L1Q5H9M0 696 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 PSRC1Q6PGN9 363 aaPredicted RBP8.29□□□□□ -1.08
VPS41-208ENST00000448833 RNF207Q6ZRF8 634 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 KIAA1211Q6ZU35 1233 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 MCF2L2Q86YR7 1114 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 PLEKHM2Q8IWE5 1019 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 RPUSD2Q8IZ73 545 aaKnown RBP8.29□□□□□ -1.08
VPS41-208ENST00000448833 RUFY2Q8WXA3 655 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 FGD4Q96M96 766 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 DSCC1Q9BVC3 393 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 SEMA6BQ9H3T3 888 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 KAT14Q9H8E8 782 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 GPCPD1Q9NPB8 672 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 TBX21Q9UL17 535 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 CIZ1Q9ULV3 898 aaPredicted RBP8.29□□□□□ -1.08
VPS41-208ENST00000448833 GNEQ9Y223 722 aaKnown RBP8.29□□□□□ -1.08
VPS41-208ENST00000448833 CD4P01730 458 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 SNHG28P0DPA3 235 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 SLC16A2P36021 539 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 ALDH5A1P51649 535 aaPredicted RBP8.28□□□□□ -1.08
VPS41-208ENST00000448833 HAND2P61296 217 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 TRDNQ13061 729 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 ASPRV1Q53RT3 343 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 C9orf50Q5SZB4 431 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 TAPT1Q6NXT6 567 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 CWC27Q6UX04 472 aaKnown RBP8.28□□□□□ -1.08
VPS41-208ENST00000448833 FAM126BQ8IXS8 530 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 SLC43A3Q8NBI5 491 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 PNMA1Q8ND90 353 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 SCFD2Q8WU76 684 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 ANKS1AQ92625 1134 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 LENG1Q96BZ8 264 aaPredicted RBP8.28□□□□□ -1.08
VPS41-208ENST00000448833 CHMP4CQ96CF2 233 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 UBAC1Q9BSL1 405 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 WDR11Q9BZH6 1224 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 MAP3K20Q9NYL2 800 aaKnown RBP8.28□□□□□ -1.08
VPS41-208ENST00000448833 MYH7BA7E2Y1 1941 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 LCTP09848 1927 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 UNC80Q8N2C7 3258 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 ABCB11O95342 1321 aa8.28□□□□□ -1.08
VPS41-208ENST00000448833 LRRC37A2A6NM11 1700 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 RBM47A0AV96 593 aaKnown RBP8.27□□□□□ -1.09
VPS41-208ENST00000448833 MYADML2A6NDP7 307 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 CTAGE5O15320 804 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 FGBP02675 491 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 PFKMP08237 780 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 SMPD1P17405 629 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 CALML3P27482 149 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 SNAP25P60880 206 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 TTBK2Q6IQ55 1244 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 CXCL17Q6UXB2 119 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 ZNF589Q86UQ0 364 aaPredicted RBP8.27□□□□□ -1.09
VPS41-208ENST00000448833 SAMD3Q8N6K7 520 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 IWS1Q96ST2 819 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 ZSCAN10Q96SZ4 725 aaPredicted RBP8.27□□□□□ -1.09
VPS41-208ENST00000448833 HIPK3Q9H422 1215 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 IL23AQ9NPF7 189 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 ZSWIM5Q9P217 1185 aa8.27□□□□□ -1.09
VPS41-208ENST00000448833 FRMPD2Q68DX3 1309 aaPredicted RBP8.27□□□□□ -1.09
VPS41-208ENST00000448833 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 ERICH2A1L162 156 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 NFIBO00712 420 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 ADCY6O43306 1168 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 DHX16O60231 1041 aaKnown RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 KDM4AO75164 1064 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 IGHDP01880 384 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 PARP1P09874 1014 aaKnown RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 ITGB8P26012 769 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 RPS6P62753 249 aaKnown RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 BEX3Q00994 111 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 PTPN11Q06124 597 aaPredicted RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 TTLL4Q14679 1199 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 SART3Q15020 963 aaKnown RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 PPP2R5BQ15173 497 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 RAB30Q15771 203 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 NFRKBQ6P4R8 1299 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 EEPD1Q7L9B9 569 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 FBXO16Q8IX29 292 aaPredicted RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 OR6J1Q8NGC5 347 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 NSUN6Q8TEA1 469 aaKnown RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 CLEC4DQ8WXI8 215 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 YTHDC1Q96MU7 727 aaKnown RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 FAM161BQ96MY7 647 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 GUCD1Q96NT3 240 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 CDX2Q99626 313 aaPredicted RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 MTG1Q9BT17 334 aaPredicted RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 PDGFCQ9NRA1 345 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 MSRAQ9UJ68 235 aa8.26□□□□□ -1.09
VPS41-208ENST00000448833 MRPL11Q9Y3B7 192 aaKnown RBP8.26□□□□□ -1.09
VPS41-208ENST00000448833 MYO9BQ13459 2157 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms