RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 DEPDC7Q96QD5 511 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 IRF2BPLQ9H1B7 796 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 KANSL2Q9H9L4 492 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 ACSL6Q9UKU0 697 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 AKT3Q9Y243 479 aa5.3□□□□□ -1.56
VPS41-207ENST00000439468 RFXAPO00287 272 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 L1CAMP32004 1257 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 EEF1DP3Q658K8 133 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 APBA2Q99767 749 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 LGR4Q9BXB1 951 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 KRTAP4-9Q9BYQ8 210 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 MBD1Q9UIS9 605 aaPredicted RBP5.29□□□□□ -1.56
VPS41-207ENST00000439468 DBR1Q9UK59 544 aaKnown RBP5.29□□□□□ -1.56
VPS41-207ENST00000439468 MSRB2Q9Y3D2 182 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 BACE2Q9Y5Z0 518 aa5.29□□□□□ -1.56
VPS41-207ENST00000439468 HRKO00198 91 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 NOP56O00567 594 aaKnown RBP5.28□□□□□ -1.56
VPS41-207ENST00000439468 AURKAO14965 403 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 KCNH1O95259 989 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 MSL3P1P0C860 447 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 CEBPAP49715 358 aaPredicted RBP5.28□□□□□ -1.56
VPS41-207ENST00000439468 EPHB3P54753 998 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 MVKQ03426 396 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 NCAPHQ15003 741 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 RCSD1Q6JBY9 416 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 RPTNQ6XPR3 784 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 SPATC1Q76KD6 591 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 JAZF1Q86VZ6 243 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 CILP2Q8IUL8 1156 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 LILRB2Q8N423 598 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 CRACR2BQ8N4Y2 399 aaPredicted RBP5.28□□□□□ -1.56
VPS41-207ENST00000439468 MRFAP1L1Q96HT8 127 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 DNAJC7Q99615 494 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 MCMBPQ9BTE3 642 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 TNFRSF12AQ9NP84 129 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 KLHL14Q9P2G3 628 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 APEX2Q9UBZ4 518 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 PFDN2Q9UHV9 154 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 KCTD3Q9Y597 815 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 IRAK3Q9Y616 596 aa5.28□□□□□ -1.56
VPS41-207ENST00000439468 C2orf71A6NGG8 1288 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 PDPK1O15530 556 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 PI3P19957 117 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 YBX1P67809 324 aaKnown RBP5.27□□□□□ -1.57
VPS41-207ENST00000439468 GRB10Q13322 594 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 KRTAP19-4Q3LI73 84 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 PLEKHN1Q494U1 663 aaPredicted RBP5.27□□□□□ -1.57
VPS41-207ENST00000439468 ZNF385BQ569K4 471 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 POMZP3Q6PJE2 187 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 ZC3H14Q6PJT7 736 aaKnown RBP5.27□□□□□ -1.57
VPS41-207ENST00000439468 SPOCD1Q6ZMY3 1216 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 CABP7Q86V35 215 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 C1QL4Q86Z23 238 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 ARHGEF39Q8N4T4 335 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 MKL1Q969V6 931 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 RCC1LQ96I51 464 aaKnown RBP5.27□□□□□ -1.57
VPS41-207ENST00000439468 CCDC113Q9H0I3 377 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 CNTD2Q9H8S5 307 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 GCM1Q9NP62 436 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 PDLIM7Q9NR12 457 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 LRP2BPQ9P2M1 347 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 SUSD2Q9UGT4 822 aa5.27□□□□□ -1.57
VPS41-207ENST00000439468 MRPL42Q9Y6G3 142 aaKnown RBP5.27□□□□□ -1.57
VPS41-207ENST00000439468 NPHP3-ACAD11A0A0J9YXS1 232 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 TLDC2A0PJX2 215 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 DIAPH1O60610 1272 aaKnown RBP5.26□□□□□ -1.57
VPS41-207ENST00000439468 PAMP19021 973 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 CDR1P51861 262 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 NCKAP1LP55160 1127 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 SSPNQ14714 243 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 NR1I3Q14994 352 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 NFE2L2Q16236 605 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 SV2CQ496J9 727 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 LCNL1Q6ZST4 164 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 NOP9Q86U38 636 aaKnown RBP5.26□□□□□ -1.57
VPS41-207ENST00000439468 CPNE8Q86YQ8 564 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 NLGN1Q8N2Q7 840 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 BVESQ8NE79 360 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 USP33Q8TEY7 942 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 MZB1Q8WU39 189 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 SIGLEC10Q96LC7 697 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 RWDD3Q9Y3V2 267 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 TBX22Q9Y458 520 aa5.26□□□□□ -1.57
VPS41-207ENST00000439468 F8W031 263 aaPredicted RBP5.25□□□□□ -1.57
VPS41-207ENST00000439468 N4BP3O15049 544 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 CYBBP04839 570 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 DBHP09172 617 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 ZNF143P52747 638 aaPredicted RBP5.25□□□□□ -1.57
VPS41-207ENST00000439468 CORO7P57737 925 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 ZNF200P98182 395 aaPredicted RBP5.25□□□□□ -1.57
VPS41-207ENST00000439468 SCRN1Q12765 414 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 FBLN7Q53RD9 439 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 PAQR3Q6TCH7 311 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 FAM177A1Q8N128 213 aaPredicted RBP5.25□□□□□ -1.57
VPS41-207ENST00000439468 KRTAP4-2Q9BYR5 136 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 CLEC1BQ9P126 229 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 EMC9Q9Y3B6 208 aa5.25□□□□□ -1.57
VPS41-207ENST00000439468 TRBV23OR9-2A0A075B6M9 112 aa5.24□□□□□ -1.57
VPS41-207ENST00000439468 ZC3H12DA2A288 527 aaKnown RBP5.24□□□□□ -1.57
VPS41-207ENST00000439468 SUSD5O60279 629 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms