RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 LRRC2Q9BYS8 371 aa17.64■□□□□ 0.41
LIMS3-201ENST00000437679 VTA1Q9NP79 307 aa17.64■□□□□ 0.41
LIMS3-201ENST00000437679 SLC12A7Q9Y666 1083 aa17.64■□□□□ 0.41
LIMS3-201ENST00000437679 SYNRGQ9UMZ2 1314 aa17.64■□□□□ 0.41
LIMS3-201ENST00000437679 ADAMTS4O75173 837 aa17.63■□□□□ 0.41
LIMS3-201ENST00000437679 HMGB1P09429 215 aaKnown RBP17.63■□□□□ 0.41
LIMS3-201ENST00000437679 ATN1P54259 1190 aaPredicted RBP17.63■□□□□ 0.41
LIMS3-201ENST00000437679 TNFAIP2Q03169 654 aa17.63■□□□□ 0.41
LIMS3-201ENST00000437679 COL9A3Q14050 684 aaPredicted RBP17.63■□□□□ 0.41
LIMS3-201ENST00000437679 SYNE3Q6ZMZ3 975 aa17.63■□□□□ 0.41
LIMS3-201ENST00000437679 DHX32Q7L7V1 743 aaKnown RBP17.63■□□□□ 0.41
LIMS3-201ENST00000437679 FBXO16Q8IX29 292 aaPredicted RBP17.63■□□□□ 0.41
LIMS3-201ENST00000437679 PIGSQ96S52 555 aa17.63■□□□□ 0.41
LIMS3-201ENST00000437679 LZTS2Q9BRK4 669 aa17.63■□□□□ 0.41
LIMS3-201ENST00000437679 PHF24Q9UPV7 400 aa17.63■□□□□ 0.41
LIMS3-201ENST00000437679 PCDHA1Q9Y5I3 950 aa17.63■□□□□ 0.41
LIMS3-201ENST00000437679 DDX49Q9Y6V7 483 aaKnown RBP17.63■□□□□ 0.41
LIMS3-201ENST00000437679 PNMA6FA0A0J9YX94 578 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 CYTH3O43739 400 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 HSPA4P34932 840 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 PDE4DQ08499 809 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 SLC35G1Q2M3R5 365 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 ADCK5Q3MIX3 580 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 IQSEC1Q6DN90 963 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 SGMS1Q86VZ5 419 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 TBC1D5Q92609 795 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 FERMT2Q96AC1 680 aa17.62■□□□□ 0.41
LIMS3-201ENST00000437679 TSEN34Q9BSV6 310 aaKnown RBP17.62■□□□□ 0.41
LIMS3-201ENST00000437679 LRRC37A2A6NM11 1700 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 ADCY6O43306 1168 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 PPP1R11O60927 126 aaPredicted RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 CFBP00751 764 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 C6orf222P0C671 652 aaPredicted RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 SMARCA1P28370 1054 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 GJA9P57773 515 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 EXOSC10Q01780 885 aaKnown RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 TAPT1Q6NXT6 567 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 SLC39A5Q6ZMH5 540 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 PCSK9Q8NBP7 692 aaKnown RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 KLHDC9Q8NEP7 349 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 SYTL5Q8TDW5 730 aaPredicted RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 PIBF1Q8WXW3 757 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 KCNB2Q92953 911 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 RRP36Q96EU6 259 aaKnown RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 SPZ1Q9BXG8 430 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 UPF3AQ9H1J1 476 aaKnown RBP17.61■□□□□ 0.41
LIMS3-201ENST00000437679 PDGFCQ9NRA1 345 aa17.61■□□□□ 0.41
LIMS3-201ENST00000437679 MOXD2PA6NHM9 499 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 EPB41L2O43491 1005 aaKnown RBP17.6■□□□□ 0.41
LIMS3-201ENST00000437679 RXRAP19793 462 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 CST5P28325 142 aaPredicted RBP17.6■□□□□ 0.41
LIMS3-201ENST00000437679 RTP1P59025 263 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 FGD1P98174 961 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 KCNA10Q16322 511 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 SAMD3Q8N6K7 520 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 NSUN6Q8TEA1 469 aaKnown RBP17.6■□□□□ 0.41
LIMS3-201ENST00000437679 TCEANC2Q96MN5 208 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 TAAR1Q96RJ0 339 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 AP5M1Q9H0R1 490 aa17.6■□□□□ 0.41
LIMS3-201ENST00000437679 MAP3K20Q9NYL2 800 aaKnown RBP17.6■□□□□ 0.41
LIMS3-201ENST00000437679 SEC63Q9UGP8 760 aaKnown RBP17.6■□□□□ 0.41
LIMS3-201ENST00000437679 ZMYND8Q9ULU4 1186 aaPredicted RBP17.6■□□□□ 0.41
LIMS3-201ENST00000437679 MYADML2A6NDP7 307 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 SMPD1P17405 629 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 EDNRBP24530 442 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 ACLYP53396 1101 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 GNASQ5JWF2 1037 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 CHRDL2Q6WN34 429 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 TLK2Q86UE8 772 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 MICU3Q86XE3 530 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 RAB11FIP4Q86YS3 637 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 FANCBQ8NB91 859 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 JAKMIP1Q96N16 626 aaKnown RBP17.59■□□□□ 0.41
LIMS3-201ENST00000437679 RMDN3Q96TC7 470 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 COL20A1Q9P218 1284 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 GNEQ9Y223 722 aaKnown RBP17.59■□□□□ 0.41
LIMS3-201ENST00000437679 ATP11BQ9Y2G3 1177 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 Q9Y3F1 56 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 SNX14Q9Y5W7 946 aa17.59■□□□□ 0.41
LIMS3-201ENST00000437679 A0A1W2PQ45 241 aaPredicted RBP17.58■□□□□ 0.4
LIMS3-201ENST00000437679 A0A1W2PQY0 241 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 OPLAHO14841 1288 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 DYNC1LI2O43237 492 aaPredicted RBP17.58■□□□□ 0.4
LIMS3-201ENST00000437679 PLEKHA8P1O95397 391 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 SYN1P17600 705 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 HSD17B4P51659 736 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 GHRHRQ02643 423 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 SNX17Q15036 470 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 ARHGEF16Q5VV41 709 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 BLOC1S2Q6QNY1 142 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 SRBD1Q8N5C6 995 aaKnown RBP17.58■□□□□ 0.4
LIMS3-201ENST00000437679 IWS1Q96ST2 819 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 WDR11Q9BZH6 1224 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 STARD7Q9NQZ5 370 aa17.58■□□□□ 0.4
LIMS3-201ENST00000437679 COLQQ9Y215 455 aaPredicted RBP17.58■□□□□ 0.4
LIMS3-201ENST00000437679 RBM47A0AV96 593 aaKnown RBP17.57■□□□□ 0.4
LIMS3-201ENST00000437679 GCOM1H8Y6P7 765 aaPredicted RBP17.57■□□□□ 0.4
LIMS3-201ENST00000437679 ZBTB43O43298 467 aa17.57■□□□□ 0.4
LIMS3-201ENST00000437679 ZEB2O60315 1214 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms