RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 CHST13Q8NET6 341 aa9.06□□□□□ -0.96
HMGA1P4-201ENST00000428643 SP7Q8TDD2 431 aaPredicted RBP9.06□□□□□ -0.96
HMGA1P4-201ENST00000428643 CLEC4DQ8WXI8 215 aa9.06□□□□□ -0.96
HMGA1P4-201ENST00000428643 MROH8Q9H579 483 aa9.06□□□□□ -0.96
HMGA1P4-201ENST00000428643 MORF4L1Q9UBU8 362 aa9.06□□□□□ -0.96
HMGA1P4-201ENST00000428643 FBXO40Q9UH90 709 aa9.06□□□□□ -0.96
HMGA1P4-201ENST00000428643 PIK3CDO00329 1044 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 CA12O43570 354 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 TLR2O60603 784 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 ERCC3P19447 782 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 AP3B2Q13367 1082 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 PIK3AP1Q6ZUJ8 805 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 BRAPQ7Z569 592 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 FCHSD1Q86WN1 690 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 TEX2Q8IWB9 1127 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 ANKRD35Q8N283 1001 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 SHCBP1Q8NEM2 672 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 PGBD1Q96JS3 809 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 ANO3Q9BYT9 981 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 PORCNQ9H237 461 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 ZSCAN16Q9H4T2 348 aaPredicted RBP9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 BIN2Q9UBW5 565 aaPredicted RBP9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 NOL7Q9UMY1 257 aaKnown RBP9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 PCDHA6Q9UN73 950 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 ZDHHC9Q9Y397 364 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 PCDHA8Q9Y5H6 950 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 ATP6V1DQ9Y5K8 247 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 IVNS1ABPQ9Y6Y0 642 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 PFASO15067 1338 aa9.05□□□□□ -0.96
HMGA1P4-201ENST00000428643 FAM205CA6NFA0 338 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 MEIS2O14770 477 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 ECM2O94769 699 aaPredicted RBP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 BCRP11274 1271 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 NCLP19338 710 aaKnown RBP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 ATP2B1P20020 1258 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 U2AF2P26368 475 aaKnown RBP eCLIP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 HSD17B4P51659 736 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 RPS6P62753 249 aaKnown RBP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 BAATQ14032 418 aaPredicted RBP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 KCTD2Q14681 263 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 NONOQ15233 471 aaKnown RBP eCLIP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 Q3C1V9 767 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 NOM1Q5C9Z4 860 aaKnown RBP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 MCTP2Q6DN12 878 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 JMYQ8N9B5 988 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 SYTL5Q8TDW5 730 aaPredicted RBP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 TNFRSF25Q93038 417 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 MMP19Q99542 508 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 EHMT1Q9H9B1 1298 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 EFCC1Q9HA90 598 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 A1CFQ9NQ94 594 aaKnown RBP9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 THSD7BQ9C0I4 1608 aa9.04□□□□□ -0.96
HMGA1P4-201ENST00000428643 M0R2N6 131 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 TRPA1O75762 1119 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 TBC1D8O95759 1140 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 FOSP01100 380 aaPredicted RBP9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 FCER1AP12319 257 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 MAPK4P31152 587 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 CLK2P49760 499 aaKnown RBP9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 MAPK8IP2Q13387 824 aaPredicted RBP9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 INF2Q27J81 1249 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 EARS2Q5JPH6 523 aaKnown RBP9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 MYSM1Q5VVJ2 828 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 FAM173BQ6P4H8 233 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 C17orf99Q6UX52 265 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 TBC1D5Q92609 795 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 TNPO1Q92973 898 aaKnown RBP9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 ZNF396Q96N95 335 aaPredicted RBP9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 CYP39A1Q9NYL5 469 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 COL20A1Q9P218 1284 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 RLFQ13129 1914 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 PARP14Q460N5 1801 aa9.03□□□□□ -0.96
HMGA1P4-201ENST00000428643 POTEB2H3BUK9 544 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 PGK2P07205 417 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 EIF2AK2P19525 551 aaKnown RBP9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 SREBF1P36956 1147 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 UBXN2AP68543 259 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 KRT85P78386 507 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 ARHGAP4P98171 946 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 GHRHRQ02643 423 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 CEBPZQ03701 1054 aaKnown RBP9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 DNM1Q05193 864 aaKnown RBP9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 RILPL1Q5EBL4 403 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 ARHGEF16Q5VV41 709 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 GPR142Q7Z601 462 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 PLEKHH3Q7Z736 793 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 NEK8Q86SG6 692 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 SAMD3Q8N6K7 520 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 TBCKQ8TEA7 893 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 CHAMP1Q96JM3 812 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 RMDN3Q96TC7 470 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 BEGAINQ9BUH8 593 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 R3HDMLQ9H3Y0 253 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 RNF186Q9NXI6 227 aa9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 MAP3K20Q9NYL2 800 aaKnown RBP9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 BAZ2BQ9UIF8 2168 aaKnown RBP9.02□□□□□ -0.97
HMGA1P4-201ENST00000428643 TNPO2O14787 897 aaKnown RBP9.01□□□□□ -0.97
HMGA1P4-201ENST00000428643 FIBPO43427 364 aa9.01□□□□□ -0.97
HMGA1P4-201ENST00000428643 ADORA2AP29274 412 aa9.01□□□□□ -0.97
HMGA1P4-201ENST00000428643 TRAPPC10P48553 1259 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms