RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 LRRC53A6NM62 1247 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 USP17L5A8MUK1 530 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 CAMTA2O94983 1202 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 PDE6BP35913 854 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 STAT3P40763 770 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 SLC1A4P43007 532 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 RPS8P62241 208 aaKnown RBP9.63□□□□□ -0.87
USP40-203ENST00000427112 TCP10Q12799 353 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 PRPF4BQ13523 1007 aaKnown RBP9.63□□□□□ -0.87
USP40-203ENST00000427112 RNF187Q5TA31 235 aaPredicted RBP9.63□□□□□ -0.87
USP40-203ENST00000427112 SOGA3Q5TF21 947 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 RCSD1Q6JBY9 416 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 MAEAQ7L5Y9 396 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 MAATS1Q7Z4T9 603 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 PLA2G12BQ9BX93 195 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 RWDD2AQ9UIY3 292 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 NFU1Q9UMS0 254 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 GOLGA6CA6NDK9 693 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 EIF3CLB5ME19 914 aaKnown RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 KRT86O43790 486 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 NTSR2O95665 410 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 GOLGA6DP0CG33 693 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 ACTN1P12814 892 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 GNGT1P63211 74 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 ALX1Q15699 326 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 TTBK2Q6IQ55 1244 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 KCTD1Q719H9 257 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 KCNK18Q7Z418 384 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 FBXL16Q8N461 479 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 TRIML1Q8N9V2 468 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 EIF3CQ99613 913 aaKnown RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 AP1M1Q9BXS5 423 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 GOLGA6AQ9NYA3 693 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 CWC15Q9P013 229 aaKnown RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 STK36Q9NRP7 1315 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 GOLGA6BA6NDN3 693 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 FAM153BP0C7A2 387 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 PBX1P40424 430 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 MAGEA1P43355 309 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 POLR2FP61218 127 aaKnown RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 GUCY2DQ02846 1103 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 FAM153CQ494X1 144 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 NT5DC1Q5TFE4 455 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 BANK1Q8NDB2 785 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 TMEM47Q9BQJ4 181 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 FAM153AQ9UHL3 310 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 SCAF8Q9UPN6 1271 aaKnown RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 C6orf229H3BNL8 230 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 CLSTN1O94985 981 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 UBXN2AP68543 259 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 CYP4A11Q02928 519 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 PFKFB3Q16875 520 aaPredicted RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 SH3RF1Q7Z6J0 888 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 SRLQ86TD4 932 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 ADSSL1Q8N142 457 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 TSEN2Q8NCE0 465 aaKnown RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 BCAS4Q8TDM0 211 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 DUSP9Q99956 384 aaKnown RBP9.62□□□□□ -0.87
USP40-203ENST00000427112 SH2D3AQ9BRG2 576 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 TSPYL1Q9H0U9 437 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 PKD2L1Q9P0L9 805 aa9.62□□□□□ -0.87
USP40-203ENST00000427112 SYF2O95926 243 aaKnown RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 SEC24CP53992 1094 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 PACS2Q86VP3 889 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 ZNF579Q8NAF0 562 aaKnown RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 RDH13Q8NBN7 331 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 KRT12Q99456 494 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 ADAMTS1Q9UHI8 967 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 FAM237AA0A1B0GTK4 181 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 RASSF10A6NK89 507 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 LGALS16A8MUM7 142 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 MAP2K7O14733 419 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 SLC37A4O43826 429 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 LDHBP07195 334 aaKnown RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 EPS15P42566 896 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 USP14P54578 494 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 GUCY1A3Q02108 690 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 DCAF17Q5H9S7 520 aaPredicted RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 CHADLQ6NUI6 762 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 SNX29Q8TEQ0 813 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 KCND1Q9NSA2 647 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 RBM12Q9NTZ6 932 aaKnown RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 CDHR2Q9BYE9 1310 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 SCN11AQ9UI33 1791 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 E9PMD0 336 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 ECM2O94769 699 aaPredicted RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 CYLC1P35663 651 aaPredicted RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 KCNJ6P48051 423 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 CARSP49589 748 aaKnown RBP9.61□□□□□ -0.87
USP40-203ENST00000427112 FAM133AQ8N9E0 248 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 GOLGA5Q8TBA6 731 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 P2RX5Q93086 422 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 NLRP3Q96P20 1036 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 SEMA6BQ9H3T3 888 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 EPB41L5Q9HCM4 733 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 ARHGAP20Q9P2F6 1191 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 HPCAL4Q9UM19 191 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 PCDHA4Q9UN74 947 aa9.61□□□□□ -0.87
USP40-203ENST00000427112 MYMKA6NI61 221 aa9.6□□□□□ -0.87
USP40-203ENST00000427112 USP17L15C9J2P7 530 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms