RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 KIFC2Q96AC6 838 aa29.95■■■□□ 2.38
LDB1-202ENST00000425280 P2RX7Q99572 595 aaKnown RBP29.95■■■□□ 2.38
LDB1-202ENST00000425280 FEZ1Q99689 392 aa29.95■■■□□ 2.38
LDB1-202ENST00000425280 RANBP17Q9H2T7 1088 aaKnown RBP29.95■■■□□ 2.38
LDB1-202ENST00000425280 GCFC2P16383 781 aaKnown RBP29.94■■■□□ 2.38
LDB1-202ENST00000425280 ARHGAP30Q7Z6I6 1101 aaPredicted RBP29.94■■■□□ 2.38
LDB1-202ENST00000425280 CABP7Q86V35 215 aa29.94■■■□□ 2.38
LDB1-202ENST00000425280 GSDMAQ96QA5 445 aa29.94■■■□□ 2.38
LDB1-202ENST00000425280 DDX25Q9UHL0 483 aaKnown RBP29.94■■■□□ 2.38
LDB1-202ENST00000425280 FEM1BQ9UK73 627 aa29.94■■■□□ 2.38
LDB1-202ENST00000425280 GTPBP6O43824 516 aaPredicted RBP29.94■■■□□ 2.38
LDB1-202ENST00000425280 FXR2P51116 673 aaKnown RBP eCLIP29.94■■■□□ 2.38
LDB1-202ENST00000425280 MCTP2Q6DN12 878 aa29.94■■■□□ 2.38
LDB1-202ENST00000425280 RASSF8Q8NHQ8 419 aa29.94■■■□□ 2.38
LDB1-202ENST00000425280 MYL5Q02045 173 aa29.93■■■□□ 2.38
LDB1-202ENST00000425280 NAP1L4Q99733 375 aaKnown RBP29.93■■■□□ 2.38
LDB1-202ENST00000425280 BLZF1Q9H2G9 400 aa29.93■■■□□ 2.38
LDB1-202ENST00000425280 RTN4Q9NQC3 1192 aaKnown RBP29.93■■■□□ 2.38
LDB1-202ENST00000425280 EPS15P42566 896 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 TPM4P67936 248 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 DCAF15Q66K64 600 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 HSD3B7Q9H2F3 369 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 FBXO28Q9NVF7 368 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 DACH1Q9UI36 760 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 ZKSCAN5Q9Y2L8 839 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 CDC25BP30305 580 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 INPP5BP32019 993 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 USP11P51784 963 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 TRAF1Q13077 416 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 CUL4BQ13620 913 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 MRFAP1L1Q96HT8 127 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 PLIN2Q99541 437 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 MMTAG2Q9BU76 263 aaKnown RBP29.92■■■□□ 2.38
LDB1-202ENST00000425280 SMCHD1A6NHR9 2005 aa29.92■■■□□ 2.38
LDB1-202ENST00000425280 CCDC174Q6PII3 467 aa29.91■■■□□ 2.38
LDB1-202ENST00000425280 LRRC15Q8TF66 581 aa29.91■■■□□ 2.38
LDB1-202ENST00000425280 CRYGNQ8WXF5 182 aa29.91■■■□□ 2.38
LDB1-202ENST00000425280 KIAA1683Q9H0B3 1180 aa29.91■■■□□ 2.38
LDB1-202ENST00000425280 HIRAP54198 1017 aaPredicted RBP29.91■■■□□ 2.38
LDB1-202ENST00000425280 TMEM266Q2M3C6 531 aa29.91■■■□□ 2.38
LDB1-202ENST00000425280 HAS1Q92839 578 aa29.91■■■□□ 2.38
LDB1-202ENST00000425280 PLCG1P19174 1290 aa29.9■■■□□ 2.38
LDB1-202ENST00000425280 PRAMEF18Q5VWM3 479 aa29.9■■■□□ 2.38
LDB1-202ENST00000425280 GGA3Q9NZ52 723 aa29.9■■■□□ 2.38
LDB1-202ENST00000425280 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.9■■■□□ 2.38
LDB1-202ENST00000425280 FOSP01100 380 aaPredicted RBP29.89■■■□□ 2.38
LDB1-202ENST00000425280 LRWD1Q9UFC0 647 aa29.89■■■□□ 2.38
LDB1-202ENST00000425280 ZNF112Q9UJU3 913 aa29.89■■■□□ 2.38
LDB1-202ENST00000425280 DOCK1Q14185 1865 aa29.89■■■□□ 2.38
LDB1-202ENST00000425280 CYP3A7-CYP3A51PA0A087WV96 503 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 GOLGA6L6A8MZA4 724 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 CYP3A7P24462 503 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 ARHGAP4P98171 946 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 PDIA5Q14554 519 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 DRC7Q8IY82 874 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 LPAR1Q92633 364 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 MBOAT7Q96N66 472 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 UTRNP46939 3433 aa29.89■■■□□ 2.37
LDB1-202ENST00000425280 PIK3CDO00329 1044 aa29.88■■■□□ 2.37
LDB1-202ENST00000425280 MSNP26038 577 aaKnown RBP29.88■■■□□ 2.37
LDB1-202ENST00000425280 LMOD1P29536 600 aaPredicted RBP29.88■■■□□ 2.37
LDB1-202ENST00000425280 HOXA13P31271 388 aaPredicted RBP29.88■■■□□ 2.37
LDB1-202ENST00000425280 FMR1Q06787 632 aaKnown RBP eCLIP29.88■■■□□ 2.37
LDB1-202ENST00000425280 SAMD1Q6SPF0 538 aaPredicted RBP29.88■■■□□ 2.37
LDB1-202ENST00000425280 HOOK2Q96ED9 719 aa29.88■■■□□ 2.37
LDB1-202ENST00000425280 SYT17Q9BSW7 474 aa29.88■■■□□ 2.37
LDB1-202ENST00000425280 CUEDC2Q9H467 287 aa29.88■■■□□ 2.37
LDB1-202ENST00000425280 KBTBD4Q9NVX7 518 aa29.88■■■□□ 2.37
LDB1-202ENST00000425280 SPDYE3A6NKU9 549 aa29.87■■■□□ 2.37
LDB1-202ENST00000425280 WDR46O15213 610 aaKnown RBP29.87■■■□□ 2.37
LDB1-202ENST00000425280 MOXD1Q6UVY6 613 aa29.87■■■□□ 2.37
LDB1-202ENST00000425280 TTC12Q9H892 705 aaPredicted RBP29.87■■■□□ 2.37
LDB1-202ENST00000425280 ZNF830Q96NB3 372 aaPredicted RBP29.87■■■□□ 2.37
LDB1-202ENST00000425280 RAB34Q9BZG1 259 aa29.87■■■□□ 2.37
LDB1-202ENST00000425280 SREBF1P36956 1147 aa29.86■■■□□ 2.37
LDB1-202ENST00000425280 MAGEF1Q9HAY2 307 aa29.86■■■□□ 2.37
LDB1-202ENST00000425280 POTEMA6NI47 508 aa29.86■■■□□ 2.37
LDB1-202ENST00000425280 DGKZQ13574 1117 aa29.86■■■□□ 2.37
LDB1-202ENST00000425280 CT47A1Q5JQC4 288 aaPredicted RBP29.86■■■□□ 2.37
LDB1-202ENST00000425280 TEX2Q8IWB9 1127 aa29.86■■■□□ 2.37
LDB1-202ENST00000425280 SCYL3Q8IZE3 742 aa29.86■■■□□ 2.37
LDB1-202ENST00000425280 MED15Q96RN5 788 aa29.86■■■□□ 2.37
LDB1-202ENST00000425280 DDNO94850 711 aaPredicted RBP29.85■■■□□ 2.37
LDB1-202ENST00000425280 RPN1P04843 607 aaKnown RBP29.85■■■□□ 2.37
LDB1-202ENST00000425280 CD44P16070 742 aaKnown RBP29.85■■■□□ 2.37
LDB1-202ENST00000425280 ERCC5P28715 1186 aaPredicted RBP29.85■■■□□ 2.37
LDB1-202ENST00000425280 ENOX1Q8TC92 643 aaKnown RBP29.85■■■□□ 2.37
LDB1-202ENST00000425280 GJA10Q969M2 543 aa29.85■■■□□ 2.37
LDB1-202ENST00000425280 CALML4Q96GE6 196 aa29.85■■■□□ 2.37
LDB1-202ENST00000425280 WRNIP1Q96S55 665 aa29.85■■■□□ 2.37
LDB1-202ENST00000425280 KCNMB3Q9NPA1 279 aa29.85■■■□□ 2.37
LDB1-202ENST00000425280 FANCLQ9NW38 375 aa29.85■■■□□ 2.37
LDB1-202ENST00000425280 ATP1A3P13637 1013 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 RNF181Q9P0P0 153 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 NRBP1Q9UHY1 535 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 MRPL11Q9Y3B7 192 aaKnown RBP29.84■■■□□ 2.37
LDB1-202ENST00000425280 PPP2R3BQ9Y5P8 575 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 MARCH6O60337 910 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 MYL1P05976 194 aa29.84■■■□□ 2.37
LDB1-202ENST00000425280 TPM3P06753 285 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms