RNA–Protein interactions for RNA: ENST00000421999.7

CMSS1-201, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMSS1, Length 4,330 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-201ENST00000421999 RAPGEF1Q13905 1077 aa10.85□□□□□ -0.67
CMSS1-201ENST00000421999 SNRNP48Q6IEG0 339 aaKnown RBP10.85□□□□□ -0.67
CMSS1-201ENST00000421999 USP17L6PQ6QN14 398 aa10.85□□□□□ -0.67
CMSS1-201ENST00000421999 CDAN1Q8IWY9 1227 aa10.85□□□□□ -0.67
CMSS1-201ENST00000421999 ADGRF4Q8IZF3 695 aa10.85□□□□□ -0.67
CMSS1-201ENST00000421999 BLZF1Q9H2G9 400 aa10.85□□□□□ -0.67
CMSS1-201ENST00000421999 TMX1Q9H3N1 280 aa10.85□□□□□ -0.67
CMSS1-201ENST00000421999 RCOR1Q9UKL0 485 aa10.85□□□□□ -0.67
CMSS1-201ENST00000421999 NEFHP12036 1026 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 ZNF577Q9BSK1 485 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 NDUFB10O96000 172 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 QRICH1Q2TAL8 776 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 EP400NLQ6ZTU2 488 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 PNMA8AQ86V59 439 aaPredicted RBP10.84□□□□□ -0.67
CMSS1-201ENST00000421999 SLFN12Q8IYM2 578 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 FAM163AQ96GL9 167 aaPredicted RBP10.84□□□□□ -0.67
CMSS1-201ENST00000421999 CSRNP2Q9H175 543 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 HPS5Q9UPZ3 1129 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 AFDNP55196 1824 aaKnown RBP10.84□□□□□ -0.67
CMSS1-201ENST00000421999 POLGP54098 1239 aaPredicted RBP10.84□□□□□ -0.67
CMSS1-201ENST00000421999 UBXN1Q04323 297 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 TROAPQ12815 778 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 PNOCQ13519 176 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 TAF1CQ15572 869 aaPredicted RBP10.84□□□□□ -0.67
CMSS1-201ENST00000421999 RNF207Q6ZRF8 634 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 GPBP1Q86WP2 473 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 ZFPM1Q8IX07 1006 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 CSGALNACT2Q8N6G5 542 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 SLF1Q9BQI6 1058 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 ACBD3Q9H3P7 528 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 LARSQ9P2J5 1176 aaKnown RBP10.84□□□□□ -0.67
CMSS1-201ENST00000421999 STK36Q9NRP7 1315 aa10.84□□□□□ -0.67
CMSS1-201ENST00000421999 LRRIQ4A6NIV6 560 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 WNT10BO00744 389 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 NLGN2Q8NFZ4 835 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 UPF1Q92900 1129 aaKnown RBP eCLIP10.83□□□□□ -0.68
CMSS1-201ENST00000421999 NRBP2Q9NSY0 501 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 CELF2O95319 508 aaKnown RBP10.83□□□□□ -0.68
CMSS1-201ENST00000421999 CTDNEP1O95476 244 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 KRT19P08727 400 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 TRAPPC10P48553 1259 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 POSTNQ15063 836 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 WDR44Q5JSH3 913 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 ZNF354CQ86Y25 554 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 NEK11Q8NG66 645 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 SYMPKQ92797 1274 aaKnown RBP10.83□□□□□ -0.68
CMSS1-201ENST00000421999 RBSNQ9H1K0 784 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 CEP83Q9Y592 693 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 UBE2Q2LH0YL09 131 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 GSDMDP57764 484 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 ZNF543Q08ER8 600 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 MTMR2Q13614 643 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 ZBTB8OSQ8IWT0 167 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 HACE1Q8IYU2 909 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 KIF4AO95239 1232 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 SLURP2P0DP57 97 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 PDHBP11177 359 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 FDPSP14324 419 aaKnown RBP10.83□□□□□ -0.68
CMSS1-201ENST00000421999 PPM1FP49593 454 aaPredicted RBP10.83□□□□□ -0.68
CMSS1-201ENST00000421999 PTPN14Q15678 1187 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 UVSSAQ2YD98 709 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 PLCH1Q4KWH8 1693 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 PRPF38AQ8NAV1 312 aaKnown RBP10.83□□□□□ -0.68
CMSS1-201ENST00000421999 CDHR1Q96JP9 859 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 RNF146Q9NTX7 359 aa10.83□□□□□ -0.68
CMSS1-201ENST00000421999 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.83□□□□□ -0.682e-6■■■□□ 18.1
CMSS1-201ENST00000421999 KDM3AQ9Y4C1 1321 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 hCG_1984214I3L0E3 225 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 RHBDL3P58872 404 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 EVX2Q03828 476 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 TBC1D8BQ0IIM8 1120 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 KARSQ15046 597 aaKnown RBP10.82□□□□□ -0.68
CMSS1-201ENST00000421999 ZNF713Q8N859 430 aaPredicted RBP10.82□□□□□ -0.68
CMSS1-201ENST00000421999 ATP6V0A1Q93050 837 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 NYAP2Q9P242 653 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 PRKAG2Q9UGJ0 569 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 CTNND2Q9UQB3 1225 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 URI1O94763 535 aaPredicted RBP10.82□□□□□ -0.68
CMSS1-201ENST00000421999 VEGFAP15692 232 aaPredicted RBP10.82□□□□□ -0.68
CMSS1-201ENST00000421999 FAM160B1Q5W0V3 765 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 PLCD3Q8N3E9 789 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 RMDN3Q96TC7 470 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 ADPGKQ9BRR6 497 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 TMEM260Q9NX78 707 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 FBXO40Q9UH90 709 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 PCDHB13Q9Y5F0 798 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 KIF28PB7ZC32 967 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 GJC1P36383 396 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 MYL5Q02045 173 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 COL9A3Q14050 684 aaPredicted RBP10.82□□□□□ -0.68
CMSS1-201ENST00000421999 FAM178BQ8IXR5 827 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 SLC7A3Q8WY07 619 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 VPS16Q9H269 839 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 TTC12Q9H892 705 aaPredicted RBP10.82□□□□□ -0.68
CMSS1-201ENST00000421999 BARHL2Q9NY43 387 aa10.82□□□□□ -0.68
CMSS1-201ENST00000421999 SEPT9Q9UHD8 586 aaPredicted RBP10.82□□□□□ -0.68
CMSS1-201ENST00000421999 TNPO2O14787 897 aaKnown RBP10.81□□□□□ -0.68
CMSS1-201ENST00000421999 KRT5P13647 590 aa10.81□□□□□ -0.68
CMSS1-201ENST00000421999 PPP1R2P41236 205 aa10.81□□□□□ -0.68
CMSS1-201ENST00000421999 PAFAH1B1P43034 410 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms