RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 ALYREFQ86V81 257 aaKnown RBP6.64□□□□□ -1.35
CLK1-202ENST00000409403 TMEM151AQ8N4L1 468 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 GBP4Q96PP9 640 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 DEPDC7Q96QD5 511 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 SLC9A7Q96T83 725 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 SLKQ9H2G2 1235 aaPredicted RBP6.64□□□□□ -1.35
CLK1-202ENST00000409403 ST7Q9NRC1 585 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 SNTG2Q9NY99 539 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 MAPK8IP1Q9UQF2 711 aa6.64□□□□□ -1.35
CLK1-202ENST00000409403 TMA7Q9Y2S6 64 aaKnown RBP6.64□□□□□ -1.35
CLK1-202ENST00000409403 ZNF500O60304 480 aaPredicted RBP6.63□□□□□ -1.35
CLK1-202ENST00000409403 GDF11O95390 407 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 CCNFP41002 786 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 RIPK4P57078 832 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 SLBPQ14493 270 aaKnown RBP eCLIP6.63□□□□□ -1.35
CLK1-202ENST00000409403 RASA3Q14644 834 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 ZYXQ15942 572 aaKnown RBP6.63□□□□□ -1.35
CLK1-202ENST00000409403 SASS6Q6UVJ0 657 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 UBE3DQ7Z6J8 389 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.63□□□□□ -1.35
CLK1-202ENST00000409403 PHACTR4Q8IZ21 702 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 WFDC12Q8WWY7 111 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 MSRB2Q9Y3D2 182 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 PXDNLA1KZ92 1463 aa6.63□□□□□ -1.35
CLK1-202ENST00000409403 UQCRHLA0A096LP55 91 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 UQCRHP07919 91 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 HSPA8P11142 646 aaKnown RBP6.62□□□□□ -1.35
CLK1-202ENST00000409403 NOS3P29474 1203 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 IREB2P48200 963 aaKnown RBP6.62□□□□□ -1.35
CLK1-202ENST00000409403 USP11P51784 963 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 ZNF746Q6NUN9 644 aaPredicted RBP6.62□□□□□ -1.35
CLK1-202ENST00000409403 KRT28Q7Z3Y7 464 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 DPH2Q9BQC3 489 aaPredicted RBP6.62□□□□□ -1.35
CLK1-202ENST00000409403 CCDC113Q9H0I3 377 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 ACSS3Q9H6R3 686 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 PHAXQ9H814 394 aaKnown RBP6.62□□□□□ -1.35
CLK1-202ENST00000409403 PCOLCE2Q9UKZ9 415 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 KANK1Q14678 1352 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 E9PCH4 1651 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 NHSQ6T4R5 1651 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 KNDC1Q76NI1 1749 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 BTAF1O14981 1849 aa6.62□□□□□ -1.35
CLK1-202ENST00000409403 TLDC2A0PJX2 215 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 GOLGA6L22H0YM25 854 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 RGS13O14921 159 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 DDAH1O94760 285 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 CST3P01034 146 aaPredicted RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 RAB6AP20340 208 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 ADGRE1Q14246 886 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 MBTPS1Q14703 1052 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 UVSSAQ2YD98 709 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 PRAMEF13Q5VWM6 474 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 FAM177A1Q8N128 213 aaPredicted RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 MICAL1Q8TDZ2 1067 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 FAM46AQ96IP4 442 aaKnown RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 TBC1D32Q96NH3 1257 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 UBL7Q96S82 380 aaPredicted RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 YIPF2Q9BWQ6 316 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 USP47Q96K76 1375 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 ANKRD30AQ9BXX3 1397 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 C10orf71Q711Q0 1435 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 ERBINQ96RT1 1412 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 FAM86C2PA6NEL3 165 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 GJB6O95452 261 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 POLR2BP30876 1174 aaKnown RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 C6orf15Q6UXA7 325 aaPredicted RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 SMC1BQ8NDV3 1235 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 CYB5D2Q8WUJ1 264 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 CCDC74BQ96LY2 380 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 FOXQ1Q9C009 403 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 ZHX1Q9UKY1 873 aaPredicted RBP6.61□□□□□ -1.35
CLK1-202ENST00000409403 DAGLAQ9Y4D2 1042 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 LTBP3Q9NS15 1303 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 ARHGEF10O15013 1369 aa6.61□□□□□ -1.35
CLK1-202ENST00000409403 FAM221BA6H8Z2 402 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 LRIG2O94898 1065 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 TSPY4P0CV99 314 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 TSPY10P0CW01 314 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 HMGN5P82970 282 aaKnown RBP6.6□□□□□ -1.35
CLK1-202ENST00000409403 HABP4Q5JVS0 413 aaKnown RBP6.6□□□□□ -1.35
CLK1-202ENST00000409403 CDPF1Q6NVV7 123 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 VHLLQ6RSH7 139 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 ARMCX6Q7L4S7 300 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 FAM178BQ8IXR5 827 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 MFSD2AQ8NA29 543 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 DHRS1Q96LJ7 313 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 KIF2CQ99661 725 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 QRICH2Q9H0J4 1663 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 SEMA6CQ9H3T2 930 aa6.6□□□□□ -1.35
CLK1-202ENST00000409403 NOL7Q9UMY1 257 aaKnown RBP6.6□□□□□ -1.35
CLK1-202ENST00000409403 SSH2Q76I76 1423 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 ANKRD30BQ9BXX2 1392 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 CGNL1Q0VF96 1302 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 B2RBV5 119 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 PDPK1O15530 556 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 ZSCAN20P17040 1043 aaPredicted RBP6.59□□□□□ -1.35
CLK1-202ENST00000409403 GBP1P32455 592 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 SLC20A2Q08357 652 aa6.59□□□□□ -1.35
CLK1-202ENST00000409403 RASGRF1Q13972 1273 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms