RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SCP2P22307 547 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 TRIM28Q13263 835 aaKnown RBP13.21□□□□□ -0.3
HMGB1-206ENST00000405805 TRIM14Q14142 442 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 FAM71BQ8TC56 605 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 SNX29Q8TEQ0 813 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 CCDC51Q96ER9 411 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 CABS1Q96KC9 395 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 RAB34Q9BZG1 259 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 NHEJ1Q9H9Q4 299 aaPredicted RBP13.21□□□□□ -0.3
HMGB1-206ENST00000405805 EHD2Q9NZN4 543 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 CCDC160A6NGH7 325 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 VEGFAP15692 232 aaPredicted RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 DNM2P50570 870 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 CCDC93Q567U6 631 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 YIPF3Q9GZM5 350 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 NBPF3Q9H094 633 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 OVOS2A0A0G2JMS6 1433 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 FMN2Q9NZ56 1722 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 OPA1O60313 960 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 ERVK-24P63145 666 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 GUCY2DQ02846 1103 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 EHHADHQ08426 723 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 NAA35Q5VZE5 725 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 USP17L2Q6R6M4 530 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 KIRREL3Q8IZU9 778 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 STAG2Q8N3U4 1231 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 UBLCP1Q8WVY7 318 aaPredicted RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 CCNL1Q9UK58 526 aaPredicted RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 RTCBQ9Y3I0 505 aaKnown RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 KLRF2D3W0D1 207 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 RIMBP2O15034 1052 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 ATP8B1O43520 1251 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 CEP104O60308 925 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 ZNF658Q5TYW1 1059 aaPredicted RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 TMC4Q7Z404 712 aa13.2□□□□□ -0.3
HMGB1-206ENST00000405805 SRBD1Q8N5C6 995 aaKnown RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 UHMK1Q8TAS1 419 aaKnown RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 RPGRQ92834 1020 aaKnown RBP13.2□□□□□ -0.3
HMGB1-206ENST00000405805 TMEM110-MUSTN1A8MSY1 372 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 FGFR1OPO95684 399 aaKnown RBP13.19□□□□□ -0.3
HMGB1-206ENST00000405805 CSF1RP07333 972 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 FCER1AP12319 257 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 PLCG1P19174 1290 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 B4GALNT4Q76KP1 1039 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 MB21D1Q8N884 522 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 RRP36Q96EU6 259 aaKnown RBP13.19□□□□□ -0.3
HMGB1-206ENST00000405805 LTN1O94822 1766 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 RPS8P62241 208 aaKnown RBP13.19□□□□□ -0.3
HMGB1-206ENST00000405805 NKX1-1Q15270 411 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-206ENST00000405805 HERC4Q5GLZ8 1057 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-206ENST00000405805 SLC4A9Q96Q91 983 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 EIF4A3P38919 411 aaKnown RBP13.19□□□□□ -0.3
HMGB1-206ENST00000405805 CPLX4Q7Z7G2 160 aa13.19□□□□□ -0.3
HMGB1-206ENST00000405805 PACSIN2Q9UNF0 486 aaPredicted RBP13.19□□□□□ -0.3
HMGB1-206ENST00000405805 FOXP2O15409 715 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 GNAQP50148 359 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 POLR2FP61218 127 aaKnown RBP13.18□□□□□ -0.3
HMGB1-206ENST00000405805 EVX2Q03828 476 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 NONOQ15233 471 aaKnown RBP eCLIP13.18□□□□□ -0.3
HMGB1-206ENST00000405805 STAG1Q8WVM7 1258 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 RFX7Q2KHR2 1363 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 WNT7AO00755 349 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 PDCLQ13371 301 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 NFRKBQ6P4R8 1299 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 SEPT14Q6ZU15 432 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 LRRC47Q8N1G4 583 aaKnown RBP13.18□□□□□ -0.3
HMGB1-206ENST00000405805 RWDD2AQ9UIY3 292 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 TOPAZ1Q8N9V7 1692 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 TOM1O60784 492 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 SMIM24O75264 130 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 CAPS2Q9BXY5 557 aa13.18□□□□□ -0.3
HMGB1-206ENST00000405805 ERVV-1B6SEH8 477 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 PRPF3O43395 683 aaKnown RBP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 PPP1R12BO60237 982 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 SPDL1Q96EA4 605 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 SELENOOQ9BVL4 669 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 DONSONQ9NYP3 566 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 LRRIQ3A6PVS8 624 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 ZRANB2O95218 330 aaKnown RBP eCLIP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 TMTC3Q6ZXV5 915 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 TEX11Q8IYF3 940 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 SH2D3CQ8N5H7 860 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 COA7Q96BR5 231 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 KRT12Q99456 494 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 EPB41L5Q9HCM4 733 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 TCEAL9Q9UHQ7 104 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 BACH1O14867 736 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 TUBBP07437 444 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 PLEKP08567 350 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 KCNJ6P48051 423 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 ZRSR2Q15696 482 aaKnown RBP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 BEND6Q5SZJ8 279 aaPredicted RBP13.17□□□□□ -0.3
HMGB1-206ENST00000405805 NOX5Q96PH1 765 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 HSD3B7Q9H2F3 369 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 NALCNQ8IZF0 1738 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 PPP1R3GB7ZBB8 358 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 GNA11P29992 359 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 MECOMQ03112 1051 aa13.17□□□□□ -0.3
HMGB1-206ENST00000405805 ARMC2Q8NEN0 867 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms